spacer
spacer

PDBsum entry 1m7c

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1m7c calculated with MOLE 2.0 PDB id
1m7c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.75 2.20 28.4 -0.34 0.36 22.5 72 5 0 0 4 6 0 0  
2 1.25 2.49 29.7 -0.36 -0.14 11.3 86 1 0 4 6 1 2 0  
3 1.23 2.63 30.8 0.91 0.48 8.0 82 3 0 2 9 2 2 0  
4 1.04 1.16 31.7 -0.53 -0.19 9.8 81 2 0 4 6 1 0 0  
5 1.24 2.63 37.5 1.32 0.75 9.1 79 2 1 1 12 3 2 0  
6 1.42 1.72 39.3 0.10 0.27 16.4 84 4 0 2 7 4 0 0  
7 1.43 1.71 43.4 0.54 0.26 12.7 81 5 0 2 9 6 0 0  
8 1.33 2.22 44.9 -0.93 -0.10 16.6 84 5 0 3 6 4 0 0  
9 1.28 2.43 47.8 0.22 0.22 15.1 87 5 0 3 10 4 0 0  
10 1.81 2.00 49.3 -0.14 0.24 15.7 79 4 2 3 4 3 1 0  
11 1.27 2.44 51.9 0.54 0.26 12.6 84 6 0 3 12 6 0 0  
12 1.43 1.73 102.8 -0.66 -0.10 14.8 80 6 3 9 10 8 1 0  
13 1.22 2.43 191.5 0.68 0.29 7.5 89 8 0 10 24 4 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer