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PDBsum entry 1m5y

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Tunnel analysis for: 1m5y calculated with MOLE 2.0 PDB id
1m5y
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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28 tunnels, coloured by tunnel radius 28 tunnels, coloured by tunnel radius 28 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.21 14.7 -1.34 -0.45 14.6 80 2 2 2 3 0 1 0  
2 2.48 18.4 -1.76 -0.56 23.1 80 2 2 1 4 0 1 0  
3 1.94 23.9 -1.05 -0.49 11.9 88 1 2 3 5 0 0 0  
4 1.83 40.7 -0.77 -0.21 18.2 83 4 4 3 7 1 2 0  
5 1.44 11.7 -1.35 -0.55 14.0 80 1 1 1 3 0 1 0  
6 1.36 14.2 0.31 0.62 12.4 85 1 2 2 6 1 0 0  
7 1.46 20.4 -1.51 -0.58 16.9 81 2 1 3 4 0 1 0  
8 1.45 26.3 -0.38 -0.36 5.8 86 1 1 4 6 1 0 0  
9 1.36 28.9 -0.50 0.13 12.6 84 2 2 4 7 1 1 0  
10 1.48 42.6 -0.78 -0.39 14.5 85 4 4 3 8 0 1 0  
11 1.50 13.7 -0.83 -0.52 11.7 81 1 1 1 4 0 1 0  
12 1.49 20.2 -1.64 -0.50 17.1 81 2 1 2 3 0 1 0  
13 1.50 28.7 -0.38 -0.26 6.6 86 1 0 4 7 1 0 0  
14 2.32 5.5 -0.21 0.17 16.8 80 1 0 0 3 0 0 0  
15 1.61 8.2 2.86 1.21 5.7 75 1 0 0 5 1 0 0  
16 2.01 9.0 -1.37 -0.20 18.1 80 1 0 1 3 0 0 0  
17 1.27 9.4 2.09 0.43 1.4 81 0 0 1 4 1 0 0  
18 1.76 4.2 -1.09 -0.25 25.8 88 0 2 0 1 0 0 0  
19 1.28 10.9 0.22 -0.10 5.0 83 1 0 0 2 1 1 0  
20 1.29 14.0 1.28 0.26 5.3 72 1 0 0 4 1 1 0  
21 2.07 6.0 -0.21 -0.05 18.3 84 0 2 0 1 1 0 0  
22 1.28 12.1 3.27 1.32 3.5 73 1 0 0 6 1 0 0  
23 2.76 3.8 -2.14 -0.79 27.8 74 1 1 1 0 0 0 0  
24 2.21 5.8 -0.44 -0.20 18.3 84 0 2 0 1 1 0 0  
25 1.36 12.4 3.28 1.30 3.5 73 1 0 0 6 1 0 0  
26 1.32 8.0 0.34 0.04 5.6 79 1 0 0 2 1 1 0  
27 1.47 9.7 0.67 0.28 4.5 65 1 0 0 3 2 0 0  
28 1.51 5.5 0.61 0.13 2.0 61 0 0 0 3 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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