PDBsum entry 1m5d Go to PDB code:  Tunnel analysis for: 1m5d calculated with MOLE 2.0 PDB id 1m5d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.45 1.45 21.9 -0.40 -0.11 9.1 83 1 2 2 4 1 0 0  BRH 611 A 2 1.33 1.33 24.3 -1.18 -0.35 11.7 83 3 3 3 3 1 0 0  BRH 611 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.