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Ligand clusters for UniProt code P33517

Ligand clusters for P33517: Cytochrome c oxidase subunit 1 OS=Rhodobacter sphaeroides GN=ctaD PE=1 SV=2

Top 6 (of 18) ligand clusters
Cluster 1.
3 ligand types
10 ligands
Cluster 2.
2 ligand types
7 ligands
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
2 ligand types
9 ligands
Cluster 6.
2 ligand types
5 ligands
Representative protein: 1m56A  
 

Structures

PDB   Schematic diagram
1m56A    
3fyeA    
3dtuA    
2gsmA    
3fyiA    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: DMU × 1
Decyl-Beta-D-Maltopyranoside
PDB code: 2gsm(A).


 
2. Ligand: HEA × 6
Heme-A
PDB codes: 1m56(A), 1m57(A), 2gsm(A), 3dtu(A), 3fye(A), 3fyi(A).


 
3. Ligand: DMU × 3
Decyl-Beta-D-Maltopyranoside
PDB codes: 3dtu(A), 3fye(A), 3fyi(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: PEH × 6
Di-Stearoyl-3-Sn-Phosphatidylethanolamine
PDB codes: 1m56(A), 1m57(A),


 
2. Ligand: TRD × 1
Tridecane
PDB code: 3dtu(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: HEA × 6
Heme-A
PDB codes: 1m56(A), 1m57(A), 2gsm(A), 3dtu(A), 3fye(A), 3fyi(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: PEH × 2
Di-Stearoyl-3-Sn-Phosphatidylethanolamine
PDB codes: 1m56(A), 1m57(A).


 
2. Ligand: PO4 × 1
Phosphate ion
PDB code: 3dtu(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: DMU × 6
Decyl-Beta-D-Maltopyranoside
PDB codes: 2gsm(A), 3fye(A), 3fyi(A),


 
2. Ligand: TRD × 3
Tridecane
PDB codes: 3dtu(A), 3fye(A), 3fyi(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: DMU × 4
Decyl-Beta-D-Maltopyranoside
PDB codes: 2gsm(A), 3dtu(A), 3fye(A), 3fyi(A).


 
2. Ligand: TRD × 1
Tridecane
PDB code: 3dtu(A).

 

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