spacer
spacer

PDBsum entry 1m1x

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1m1x calculated with MOLE 2.0 PDB id
1m1x
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.49 29.4 -0.46 -0.23 13.2 81 3 1 1 4 1 1 0  NAG 1 I NDG 2 I
2 2.19 2.35 35.8 -0.63 -0.27 12.2 80 3 2 3 4 1 1 1  NAG 3371 B
3 2.12 2.42 37.2 -0.89 -0.31 15.2 82 3 4 1 3 0 3 1  NAG 1 I
4 3.69 3.70 41.4 -0.47 -0.40 12.5 94 2 2 6 3 0 0 0  NAG 1 I
5 2.11 2.41 49.1 -0.69 -0.48 11.7 88 1 3 5 3 0 2 1  
6 2.25 2.25 61.7 -1.23 -0.62 13.9 87 5 5 6 3 1 1 0  NAG 3371 B
7 1.56 1.55 63.5 -1.48 -0.54 20.1 84 8 5 5 5 1 0 0  
8 2.66 3.93 65.7 -2.28 -0.58 26.1 86 9 4 4 2 0 1 0  
9 2.25 2.26 66.7 -1.50 -0.60 18.5 87 7 4 5 3 1 1 0  NAG 3371 B
10 2.68 3.93 67.4 -2.04 -0.59 22.6 87 7 5 5 2 0 1 0  
11 2.54 2.85 101.5 -1.72 -0.50 21.7 87 10 4 7 5 1 2 0  NAG 1 C NAG 2 C
12 1.56 1.56 101.7 -1.26 -0.51 18.3 84 9 5 7 7 2 1 0  NAG 1 C NAG 2 C
13 2.50 2.85 103.3 -1.56 -0.53 18.8 87 8 5 8 5 1 2 0  NAG 1 C NAG 2 C
14 1.15 1.39 110.6 -1.56 -0.45 17.9 84 10 6 10 6 4 4 0  NAG 1 C NAG 2 C
15 1.17 1.47 112.6 -1.66 -0.45 20.0 82 10 6 9 5 4 3 0  
16 1.23 1.34 120.3 -1.34 -0.42 16.5 84 9 7 11 7 4 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer