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PDBsum entry 1lv5

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1lv5 calculated with MOLE 2.0 PDB id
1lv5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.72 1.86 25.8 -1.81 -0.59 27.6 79 3 6 0 2 1 1 0  
2 1.73 1.87 27.9 -1.61 -0.49 26.4 79 3 4 1 3 1 0 0  DG 21 C DC 7 D
3 1.73 1.73 29.3 -1.15 -0.49 18.3 81 2 4 2 3 1 0 0  
4 1.11 2.57 19.8 3.10 1.12 4.0 70 1 0 0 8 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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