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PDBsum entry 1lqk

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1lqk calculated with MOLE 2.0 PDB id
1lqk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.93 13.2 -1.72 0.50 19.2 65 5 0 1 0 5 0 1  501 PO4 A
2 2.07 16.1 -1.74 0.45 21.7 65 5 0 1 0 5 0 1  401 PO4 B
3 1.88 17.9 -1.22 -0.12 7.9 75 2 1 0 2 3 2 0  
4 1.85 19.2 -1.26 -0.08 7.4 78 2 1 0 2 3 2 0  
5 1.77 20.3 -1.25 -0.08 8.0 73 2 1 0 2 3 2 0  
6 1.76 20.8 -1.20 -0.06 6.6 76 2 1 0 2 3 2 0  
7 1.84 5.9 1.65 0.15 1.5 79 0 0 2 3 0 0 0  
8 2.15 7.5 -1.47 -0.68 16.9 76 1 2 2 0 2 0 0  
9 2.16 4.0 -1.85 -0.78 19.3 88 1 1 1 0 0 0 0  
10 1.84 8.9 -2.25 -0.86 23.1 81 1 1 1 0 0 0 0  
11 2.52 5.6 0.06 -0.39 2.8 70 0 0 1 2 1 0 0  
12 1.51 7.4 -1.34 -0.43 24.8 71 0 2 1 1 1 0 0  
13 1.46 7.6 -1.34 -0.43 24.8 71 0 2 1 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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