spacer
spacer

PDBsum entry 1lp9

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1lp9 calculated with MOLE 2.0 PDB id
1lp9
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.46 3.49 28.0 -1.27 -0.50 16.8 82 3 3 5 2 1 0 0  
2 1.26 1.38 29.2 -1.54 -0.52 17.8 79 3 1 1 3 1 1 0  
3 2.21 3.17 29.7 -1.55 -0.20 15.1 72 4 3 2 3 5 2 0  
4 2.92 3.60 29.9 -0.91 -0.53 15.1 84 2 3 4 4 0 1 0  
5 1.26 1.38 38.8 -2.33 -0.49 27.6 79 2 3 1 2 1 0 0  
6 2.17 3.45 45.3 -1.73 -0.36 21.3 74 4 5 2 2 4 1 0  
7 1.03 1.42 59.5 -1.54 -0.44 16.9 77 4 6 3 2 4 3 0  
8 2.56 2.76 73.0 -1.57 -0.42 22.1 86 9 8 8 5 3 0 0  
9 1.62 3.88 94.9 -2.15 -0.51 25.3 82 7 7 6 3 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer