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PDBsum entry 1lk9

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Top Page protein ligands metals Protein-protein interface(s) clefts links
Cleft analysis for: 1lk9 PDB id
1lk9
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 3275.86 1.07 75.27 1 13.23 1 11.51 1 9 10 21 12 12 8 5 PLP 600[A], EPE 852[A] (26 atoms)
2 3063.66 0.00 72.78 2 11.71 3 10.39 6 9 9 18 9 12 7 4 EPE 851[A], DHA 850[B] (21 atoms)
3 2704.22 0.00 68.40 5 11.50 4 11.12 3 9 8 12 12 7 5 1 NAG 500[A], FUC 501[A] (6 atoms)
4 1525.50 0.00 68.54 4 11.48 5 10.97 4 6 6 8 5 3 1 1 SO4 910[A] (5 atoms)
5 1498.50 0.00 72.31 3 12.57 2 11.32 2 6 6 8 5 4 1 1  
6 1938.09 0.00 64.45 7 10.48 6 10.87 5 5 5 11 8 6 3 0 NAG 500[B], FUC 501[B] (15 atoms)
7 1951.59 0.00 61.72 9 9.03 7 9.11 8 8 8 7 11 1 3 0  
8 1864.69 0.00 64.87 6 7.69 9 9.03 9 8 8 5 13 2 3 0 SO4 901[B] (5 atoms)
9 1672.31 0.00 59.07 10 7.16 10 9.34 7 4 6 9 8 5 2 0  
10 1455.47 0.00 61.82 8 8.34 8 8.23 10 6 6 2 6 3 1 0 SO4 906[A] (5 atoms)
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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