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PDBsum entry 1lgd

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Cleft analysis for: 1lgd PDB id
1lgd
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2241.42 1.88 64.83 5 11.53 1 13.80 1 10 5 7 4 5 10 0  
2 1193.91 0.00 70.37 2 8.04 3 10.19 2 7 4 6 9 6 4 0 BCT 263[A] (3 atoms)
3 868.64 0.00 54.50 10 6.50 8 7.89 6 3 2 2 5 1 4 0  
4 527.34 0.00 54.64 9 6.76 7 8.28 3 2 1 2 3 0 5 0  
5 387.28 0.00 67.06 3 7.41 5 7.89 5 3 2 5 1 2 1 0  
6 448.03 0.00 55.31 8 4.05 9 7.36 7 4 0 2 3 3 0 0  
7 502.88 0.00 66.84 4 3.25 10 5.69 10 2 3 4 3 2 3 0  
8 525.23 0.00 62.42 6 7.97 4 8.26 4 3 2 4 6 0 1 0  
9 434.53 0.00 61.33 7 7.36 6 6.57 9 2 2 2 3 3 2 0  
10 288.56 0.00 72.05 1 10.39 2 7.08 8 4 1 1 0 3 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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