spacer
spacer

PDBsum entry 1l9n

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1l9n calculated with MOLE 2.0 PDB id
1l9n
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
26 tunnels, coloured by tunnel radius 19 tunnels, coloured by tunnel radius 19 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.41 18.4 -1.43 -0.62 18.9 80 2 4 2 2 0 0 0  
2 1.44 23.1 -1.50 -0.67 19.2 83 3 4 2 2 0 0 0  
3 1.41 19.2 -1.26 -0.59 16.4 83 2 4 3 2 0 0 0  
4 1.35 22.7 -0.91 -0.60 4.8 93 1 1 5 2 0 0 0  
5 1.68 16.4 -2.48 -0.60 23.0 89 4 2 3 0 1 0 0  
6 1.57 24.4 -1.80 -0.59 17.4 89 2 2 3 2 1 1 0  
7 1.53 24.4 -1.88 -0.39 23.0 90 2 3 3 1 1 0 0  
8 1.36 19.2 -0.88 -0.38 16.2 69 1 2 1 0 2 1 1  
9 1.26 15.1 -1.37 -0.55 18.7 72 1 2 0 1 2 0 0  
10 1.43 15.7 -1.58 -0.70 16.5 79 1 2 2 0 2 0 0  
11 1.44 18.4 -0.53 -0.34 14.8 76 1 2 3 0 2 0 1  
12 1.44 22.9 -1.04 -0.43 16.5 80 1 2 4 0 2 0 1  
13 1.80 9.2 -0.92 -0.25 11.2 90 1 1 4 4 0 0 0  
14 1.54 11.2 -0.87 -0.31 15.2 88 1 2 4 3 0 0 0  
15 1.38 13.0 0.21 0.10 2.2 80 0 0 1 3 2 0 0  
16 2.21 5.1 -1.49 -0.26 21.4 77 1 1 1 2 0 1 0  
17 1.80 4.4 -1.01 -0.16 21.3 71 1 1 0 2 0 1 0  
18 1.43 13.1 0.24 -0.47 1.9 100 0 0 2 3 0 1 0  
19 1.41 3.8 1.08 0.67 14.8 88 1 0 0 5 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer