 |
PDBsum entry 1l3w
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1l3w calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1l3w
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
10 tunnels,
coloured by tunnel radius |
|
9 tunnels,
coloured by
tunnel radius
|
9 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.33 |
2.23 |
17.7 |
1.56 |
0.59 |
1.4 |
78 |
|
0 |
0 |
0 |
6 |
2 |
1 |
0 |
|
|
 |
|
2 |
 |
1.13 |
2.71 |
31.1 |
1.82 |
0.76 |
5.7 |
74 |
1 |
1 |
0 |
9 |
4 |
0 |
0 |
|
|
3 |
 |
1.23 |
2.20 |
35.4 |
2.53 |
0.84 |
1.6 |
79 |
0 |
1 |
1 |
10 |
4 |
1 |
0 |
|
|
4 |
 |
1.22 |
3.02 |
33.4 |
1.19 |
0.28 |
5.0 |
86 |
1 |
1 |
1 |
9 |
1 |
2 |
0 |
|
|
5 |
 |
1.24 |
2.97 |
34.2 |
1.36 |
0.47 |
6.3 |
90 |
0 |
2 |
3 |
9 |
2 |
0 |
0 |
|
|
6 |
 |
1.09 |
2.07 |
35.6 |
1.99 |
0.65 |
3.3 |
89 |
1 |
0 |
1 |
10 |
1 |
0 |
0 |
|
|
7 |
 |
1.24 |
2.94 |
35.9 |
1.19 |
0.39 |
7.2 |
89 |
0 |
3 |
2 |
9 |
2 |
0 |
0 |
|
|
8 |
 |
1.21 |
3.44 |
15.1 |
0.91 |
0.74 |
8.3 |
76 |
1 |
1 |
0 |
4 |
2 |
0 |
0 |
|
 |
9 |
 |
1.21 |
3.41 |
17.1 |
1.01 |
0.73 |
8.2 |
79 |
1 |
1 |
0 |
5 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program