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PDBsum entry 1kn6

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Hydrolase PDB id
1kn6
Jmol
Contents
Protein chain
73 a.a. *
* Residue conservation analysis

References listed in PDB file
Key reference
Title Solution structure of the pro-Hormone convertase 1 pro-Domain from mus musculus.
Authors M.A.Tangrea, P.N.Bryan, N.Sari, J.Orban.
Ref. J Mol Biol, 2002, 320, 801-812. [DOI no: 10.1016/S0022-2836(02)00543-0]
PubMed id 12095256
Abstract
The solution structure of the mouse pro-hormone convertase (PC) 1 pro-domain was determined using heteronuclear NMR spectroscopy and is the first structure to be obtained for any of the domains in the convertase family. The ensemble of NMR-derived structures shows a well-ordered core consisting of a four-stranded antiparallel beta-sheet with two alpha-helices packed against one side of this sheet. Sequence homology suggests that the other eukaryotic PC pro-domains will have the same overall fold and most of the residues forming the hydrophobic core of PC1 are highly conserved within the PC family. However, some of the core residues are predicted by homology to be replaced by polar amino acid residues in other PC pro-domains and this may help to explain their marginal stability. Interestingly, the folding topology observed here is also seen for the pro-domain of bacterial subtilisin despite little or no sequence homology. Both the prokaryotic and eukaryotic structures have hydrophobic residues clustered on the solvent-accessible surface of their beta-sheets although the individual residue types differ. In the bacterial case this region is buried at the binding interface with the catalytic domain and, in the eukaryotic PC family, these surface residues are conserved. We therefore propose that the hydrophobic patch in the PC1 pro-domain is involved in the binding interface with its cognate catalytic domain in a similar manner to that seen for the bacterial system. The PC1 pro-domain structure also reveals potential mechanisms for the acid-induced dissociation of the complex between pro- and catalytic domains.
Figure 1.
Figure 1. Schematic representation of domain organization in the mammalian pro-hormone convertase family and comparison with bacterial subtilisin BPN'.
Figure 4.
Figure 4. (a) View from the a1-helix side of the hydrophobic core for a representative structure from the ensemble. Side-chains in the hydrophobic core are labeled and shown in purple. (b) View from the a2-helix side of the protein.
The above figures are reprinted by permission from Elsevier: J Mol Biol (2002, 320, 801-812) copyright 2002.
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