PDBsum entry 1kko Go to PDB code:  Tunnel analysis for: 1kko calculated with MOLE 2.0 PDB id 1kko Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 2.55 27.5 -0.79 -0.05 26.2 84 4 3 0 7 0 0 0   2 1.24 2.40 29.7 -0.53 0.03 24.1 84 5 2 0 7 0 0 0   3 1.21 3.47 32.3 -0.67 -0.05 23.3 83 4 3 0 8 0 0 0   4 1.30 2.46 33.5 -0.84 -0.08 24.6 82 5 4 0 8 0 0 0   5 1.20 2.19 45.7 -1.05 -0.24 20.4 86 4 3 2 8 0 0 0  MSE 1 B 6 1.28 1.28 32.2 -1.57 -0.66 18.9 86 5 3 3 2 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.