spacer
spacer

PDBsum entry 1kej

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 1kej calculated with MOLE 2.0 PDB id
1kej
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.62 34.7 -0.91 -0.22 22.8 86 4 5 2 5 1 0 1  DAD 601 A CO 701 A
2 1.25 1.62 40.3 -0.93 -0.27 22.3 85 5 4 0 7 1 0 0  DAD 601 A CO 701 A NA 703 A
3 1.32 1.32 16.5 1.07 0.30 10.9 74 1 1 1 6 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer