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PDBsum entry 1kd0
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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1kd0 calculated with MOLE 2.0 PDB id
1kd0
Pores calculated on whole structure Pores calculated excluding ligands
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3 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.08 1.08 27.2 0.30 -0.34 2.7 85 0 1 1 6 0 1 0  MSE 276 B MSE 288 B MSE 327 B
2 2.51 3.91 34.5 -1.47 -0.19 17.3 76 3 5 3 2 4 0 1  MSE 389 A
3 1.64 1.67 35.6 -1.29 -0.17 27.9 83 9 2 0 5 0 0 0  EDO 701 A EDO 702 B
4 1.44 1.60 36.4 -0.08 -0.20 13.2 81 4 4 1 6 2 0 0  MSE 389 B MSE 395 B
5 1.09 1.10 36.7 -1.12 -0.57 12.0 80 2 1 1 1 1 0 1  MSE 346 B MSE 353 B
6 1.45 1.56 46.5 0.15 -0.03 8.6 77 5 2 2 8 3 0 1  MSE 389 B MSE 395 B
7 1.18 2.00 55.0 -1.73 -0.32 26.6 82 9 4 2 5 0 0 0  MSE 395 B MSE 396 B EDO 702 B
8 2.63 2.63 56.0 -2.41 -0.62 26.9 81 4 5 1 1 1 0 0  
9 1.50 1.68 58.5 -0.26 -0.25 13.8 81 5 3 1 7 2 1 0  MSE 389 A MSE 395 A
10 2.53 3.77 62.4 -1.21 -0.17 15.7 75 6 5 7 4 8 0 1  MSE 389 A MSE 389 B
11 1.40 1.55 75.8 -0.75 -0.18 17.0 77 9 4 4 9 6 1 0  MSE 389 A MSE 395 A MSE 389 B
12 1.30 2.20 78.8 -0.56 -0.22 13.5 83 6 4 4 9 0 3 0  MSE 395 A MSE 396 A MSE 395 B MSE 396 B
13 1.22 2.70 79.6 -1.67 -0.30 27.2 83 12 4 2 6 0 1 0  MSE 395 A MSE 396 A EDO 702 B
14 1.15 1.39 79.4 -0.85 -0.25 14.4 82 5 7 5 7 4 1 0  MSE 276 B MSE 285 B MSE 288 B
15 1.22 2.56 88.8 -1.17 -0.31 18.1 81 11 6 5 10 3 0 1  MSE 389 A MSE 395 A MSE 396 A EDO 702 B
16 1.39 2.02 106.8 -1.39 -0.41 19.2 83 8 3 2 4 0 1 0  MSE 376 A MSE 402 A
17 1.19 1.82 162.9 -0.60 -0.28 13.4 84 9 7 7 11 0 3 0  MSE 376 A MSE 395 A MSE 396 A MSE 402 A MSE 395 B
MSE 396 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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