 |
PDBsum entry 1kb6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1kb6 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1kb6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.15 |
2.45 |
39.0 |
-2.03 |
-0.63 |
26.8 |
86 |
|
5 |
3 |
0 |
2 |
0 |
0 |
0 |
|
DG 406 C DT 407 C DA 426 D DT 427 D
|
 |
|
2 |
 |
1.62 |
1.93 |
47.2 |
-1.14 |
-0.63 |
12.3 |
76 |
3 |
1 |
1 |
1 |
1 |
1 |
0 |
DA 410 C DT 411 C DG 412 C DA 413 C DC 423 D DT
424 D DT 427 D DT 428 D DC 429 D
|
|
3 |
 |
1.84 |
2.00 |
61.9 |
-1.66 |
-0.60 |
20.6 |
77 |
10 |
3 |
2 |
4 |
1 |
0 |
0 |
DC 401 C DA 402 C DC 403 C DG 406 C DT 407 C DA
410 C DT 411 C DG 412 C DA 413 C DA 426 D DT 427
D DT 428 D DC 429 D DA 430 D DC 431 D DC 432 D DC
433 D DG 434 D
|
 |
4 |
 |
1.83 |
1.96 |
74.0 |
-1.62 |
-0.65 |
17.7 |
79 |
4 |
2 |
1 |
1 |
0 |
1 |
0 |
DC 401 C DA 402 C DC 403 C DA 410 C DT 411 C DG
412 C DA 413 C DT 427 D DT 428 D DC 429 D DA 430
D DC 431 D DC 432 D DG 434 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program