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PDBsum entry 1k9m
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Top Page protein dna_rna ligands metals Protein-protein interface(s) links
Ribosome PDB id
1k9m
Contents
Protein chains
237 a.a. *
337 a.a. *
246 a.a. *
140 a.a. *
172 a.a. *
119 a.a. *
29 a.a. *
156 a.a. *
142 a.a. *
132 a.a. *
145 a.a. *
194 a.a. *
186 a.a. *
115 a.a. *
143 a.a. *
95 a.a. *
150 a.a. *
81 a.a. *
119 a.a. *
53 a.a. *
65 a.a. *
154 a.a. *
82 a.a. *
142 a.a. *
73 a.a. *
56 a.a. *
46 a.a. *
92 a.a. *
DNA/RNA
Ligands
TYK
Metals
__K ×3
_NA ×85
_CL ×22
_MG ×119
_CD ×5
Waters ×7877
* Residue conservation analysis
procheck   Generate full PROCHECK analyses

PROCHECK summary for 1k9m

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         2682       85.7%*  
Additional allowed regions [a,b,l,p]        404       12.9%          
Generously allowed regions [~a,~b,~l,~p]     29        0.9%          
Disallowed regions         [XX]              13        0.4%*  
                                           ----      ------
Non-glycine and non-proline residues       3128      100.0%

End-residues (excl. Gly and Pro)             56

Glycine residues                            337
Proline residues                            180
                                           ----
Total number of residues                   3701

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.47      
     Chi1-chi2 distribution          -0.09      
     Chi1 only                        0.01      
     Chi3 & chi4                      0.41      
     Omega                            0.57      
                                                   0.07      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.55      
     Main-chain bond angles           0.33      
                                                   0.42      
                                                  =====

     OVERALL AVERAGE                               0.21      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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