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PDBsum entry 1k9i
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Tunnel analysis for: 1k9i calculated with  MOLE 2.0
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PDB id
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1k9i
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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20 tunnels,
coloured by tunnel radius |
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17 tunnels,
coloured by
tunnel radius
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17 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.26 |
2.47 |
34.7 |
-1.07 |
-0.52 |
13.7 |
85 |
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2 |
3 |
5 |
5 |
1 |
1 |
0 |
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2 |
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1.26 |
2.46 |
35.3 |
-0.47 |
-0.37 |
8.0 |
88 |
2 |
1 |
5 |
5 |
1 |
1 |
0 |
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3 |
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1.26 |
2.44 |
41.7 |
-0.30 |
-0.02 |
7.0 |
86 |
1 |
1 |
7 |
3 |
3 |
0 |
0 |
MAN 1 M MAN 2 M NAG 3 M MAN 4 M NAG 5 M
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4 |
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1.27 |
2.48 |
45.8 |
-1.12 |
-0.39 |
10.9 |
83 |
3 |
0 |
7 |
3 |
2 |
1 |
0 |
MAN 4 M NAG 5 M
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5 |
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1.26 |
2.51 |
51.9 |
-1.28 |
-0.29 |
15.5 |
87 |
3 |
3 |
9 |
4 |
2 |
1 |
0 |
MAN 1 M MAN 2 M NAG 3 M MAN 4 M NAG 5 M
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6 |
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1.27 |
2.54 |
60.2 |
-1.27 |
-0.38 |
14.4 |
86 |
4 |
2 |
11 |
5 |
2 |
1 |
0 |
NAG 5 L MAN 4 M NAG 5 M
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7 |
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1.20 |
2.18 |
61.0 |
-1.18 |
-0.33 |
8.3 |
77 |
4 |
0 |
9 |
3 |
5 |
1 |
0 |
MAN 4 L NAG 5 L
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8 |
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1.26 |
2.39 |
62.0 |
-1.15 |
-0.38 |
13.0 |
85 |
4 |
2 |
11 |
5 |
2 |
1 |
0 |
NAG 5 L MAN 4 M NAG 5 M
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9 |
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1.28 |
2.53 |
65.0 |
-1.70 |
-0.47 |
13.0 |
86 |
4 |
0 |
11 |
3 |
3 |
1 |
0 |
MAN 4 L NAG 5 L MAN 4 M NAG 5 M
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10 |
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1.20 |
1.44 |
65.1 |
-0.94 |
-0.21 |
9.6 |
83 |
1 |
4 |
12 |
2 |
5 |
1 |
1 |
MAN 1 N MAN 2 N NAG 3 N MAN 4 N NAG 5 N
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11 |
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1.21 |
2.04 |
71.9 |
-1.28 |
-0.41 |
10.2 |
83 |
5 |
0 |
12 |
2 |
4 |
2 |
0 |
NAG 5 L MAN 1 M MAN 4 M NAG 5 M
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12 |
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1.21 |
1.93 |
77.1 |
-1.32 |
-0.34 |
13.2 |
86 |
5 |
3 |
14 |
3 |
4 |
2 |
0 |
NAG 5 L MAN 1 M MAN 2 M NAG 3 M MAN 4 M NAG 5 M
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13 |
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1.22 |
1.98 |
78.9 |
-1.31 |
-0.35 |
13.9 |
81 |
5 |
2 |
11 |
5 |
3 |
2 |
0 |
NAG 5 L
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14 |
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1.22 |
2.07 |
81.4 |
-1.20 |
-0.40 |
11.3 |
81 |
4 |
1 |
12 |
4 |
4 |
2 |
0 |
NAG 5 L
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15 |
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1.28 |
2.37 |
83.9 |
-1.06 |
-0.35 |
8.4 |
89 |
3 |
1 |
15 |
6 |
4 |
1 |
0 |
NAG 5 L MAN 1 M MAN 4 M NAG 5 M
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16 |
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1.19 |
2.26 |
84.4 |
-1.38 |
-0.47 |
13.0 |
83 |
4 |
3 |
14 |
4 |
5 |
2 |
0 |
NAG 5 L MAN 4 M NAG 5 M
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17 |
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1.20 |
1.96 |
85.1 |
-1.30 |
-0.35 |
12.0 |
85 |
6 |
2 |
15 |
4 |
4 |
2 |
0 |
NAG 5 L MAN 4 M NAG 5 M
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program