PDBsum entry 1k5g Go to PDB code:  Tunnel analysis for: 1k5g calculated with MOLE 2.0 PDB id 1k5g Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 24 tunnels, coloured by tunnel radius 24 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.59 24.5 0.21 0.12 7.7 76 3 1 1 2 3 1 0  GDP 4250 J 2 1.18 1.58 40.6 -0.50 -0.23 9.7 80 4 2 2 3 3 1 0  GDP 4250 J 3 1.19 1.31 24.8 0.10 0.11 10.0 78 4 1 1 2 3 0 0  GDP 1250 A 4 1.19 1.56 24.9 0.12 0.17 10.2 79 5 1 1 2 3 0 0  GDP 1250 A 5 1.19 1.61 26.5 0.02 0.10 9.5 80 4 1 2 2 3 0 0  GDP 1250 A 6 1.18 1.59 36.7 -0.46 -0.22 9.8 81 4 2 1 3 3 0 0  GDP 1250 A 7 1.20 1.31 36.9 -0.45 -0.19 9.6 82 5 2 1 3 3 0 0  GDP 1250 A 8 1.19 1.32 38.4 -0.55 -0.24 9.6 83 4 2 2 3 3 0 0  GDP 1250 A 9 1.12 1.21 25.6 -0.46 -0.06 13.8 78 4 1 1 2 3 0 0  GDP 3250 G 10 1.13 1.21 26.2 -0.44 0.01 14.5 79 5 1 1 2 3 0 0  GDP 3250 G 11 1.12 1.21 36.9 -0.84 -0.37 12.1 83 4 2 2 3 3 0 0  GDP 3250 G 12 1.13 1.21 37.4 -0.73 -0.31 11.4 83 5 2 2 3 3 0 0  GDP 3250 G 13 1.10 1.19 26.1 -0.28 0.01 12.9 78 4 1 1 2 3 0 0  GDP 2250 D 14 1.12 1.20 26.2 -0.27 0.06 13.3 79 5 1 1 2 3 0 0  GDP 2250 D 15 1.10 1.20 37.0 -0.78 -0.31 11.7 83 4 2 2 3 3 0 0  GDP 2250 D 16 1.11 1.19 37.0 -0.66 -0.28 10.8 83 5 2 2 3 3 0 0  GDP 2250 D 17 1.48 1.66 16.0 -1.52 -0.30 22.6 75 2 1 1 1 1 0 0   18 1.48 1.66 21.6 -2.22 -0.37 31.8 74 4 2 1 1 1 0 0   19 1.27 1.40 17.3 -1.96 -0.35 26.0 77 2 2 1 1 1 0 0   20 1.64 2.34 20.4 -2.78 -0.52 32.2 76 4 3 1 0 2 0 0   21 1.72 1.96 24.6 -2.18 -0.42 28.0 73 3 3 1 1 2 0 0   22 1.31 1.46 17.2 -1.93 -0.45 24.8 77 2 2 1 1 1 0 0   23 1.51 1.68 23.3 -1.41 -0.51 19.4 79 3 2 1 2 1 0 0   24 1.52 1.68 25.8 -2.07 -0.20 25.2 77 3 3 2 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.