 |
PDBsum entry 1k5d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1k5d calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1k5d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
16 pores,
coloured by radius |
|
17 pores,
coloured by radius
|
17 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.29 |
1.54 |
26.7 |
-1.08 |
-0.07 |
14.0 |
76 |
|
1 |
3 |
2 |
4 |
1 |
2 |
0 |
|
|
 |
|
2 |
 |
1.45 |
1.45 |
30.7 |
-0.64 |
-0.22 |
14.9 |
84 |
1 |
3 |
0 |
4 |
1 |
1 |
0 |
|
|
3 |
 |
1.28 |
1.51 |
26.5 |
-0.86 |
-0.15 |
16.7 |
78 |
2 |
4 |
1 |
5 |
1 |
1 |
0 |
|
|
4 |
 |
1.40 |
1.57 |
30.6 |
-0.97 |
-0.27 |
18.6 |
79 |
4 |
3 |
1 |
3 |
2 |
0 |
0 |
|
|
5 |
 |
3.15 |
3.31 |
31.4 |
-0.93 |
-0.07 |
9.7 |
69 |
0 |
3 |
1 |
3 |
1 |
2 |
0 |
|
|
6 |
 |
2.63 |
3.95 |
41.8 |
-1.23 |
-0.31 |
21.3 |
78 |
6 |
3 |
1 |
3 |
0 |
2 |
0 |
|
|
7 |
 |
1.92 |
3.40 |
45.1 |
-1.66 |
-0.29 |
27.2 |
79 |
9 |
4 |
2 |
4 |
0 |
1 |
0 |
|
|
8 |
 |
1.93 |
3.31 |
45.3 |
-1.88 |
-0.47 |
26.6 |
80 |
3 |
6 |
4 |
2 |
0 |
1 |
0 |
|
|
9 |
 |
2.13 |
2.46 |
47.4 |
-1.68 |
-0.38 |
22.1 |
81 |
5 |
4 |
4 |
2 |
0 |
1 |
0 |
|
|
10 |
 |
1.50 |
1.50 |
64.6 |
-1.95 |
-0.44 |
28.0 |
83 |
8 |
6 |
5 |
3 |
0 |
1 |
0 |
|
|
11 |
 |
1.40 |
1.58 |
64.6 |
-2.37 |
-0.57 |
33.6 |
83 |
6 |
8 |
6 |
3 |
0 |
1 |
0 |
|
|
12 |
|
1.85 |
3.52 |
115.8 |
-1.97 |
-0.46 |
26.6 |
81 |
8 |
11 |
6 |
3 |
1 |
1 |
0 |
|
|
13 |
|
1.19 |
1.28 |
56.3 |
-2.62 |
-0.64 |
27.9 |
89 |
6 |
6 |
3 |
1 |
0 |
1 |
0 |
|
|
14 |
|
1.88 |
3.07 |
58.8 |
-1.12 |
-0.18 |
24.0 |
79 |
5 |
3 |
2 |
2 |
3 |
0 |
0 |
GNP 1250 A
|
|
15 |
|
1.19 |
1.28 |
76.4 |
-1.84 |
-0.51 |
23.6 |
88 |
6 |
5 |
4 |
2 |
1 |
0 |
0 |
|
|
16 |
|
1.58 |
1.77 |
78.4 |
-2.99 |
-0.62 |
35.1 |
80 |
10 |
8 |
3 |
0 |
2 |
2 |
0 |
|
 |
17 |
|
1.41 |
1.60 |
27.2 |
-0.92 |
0.04 |
12.6 |
78 |
1 |
4 |
2 |
4 |
1 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program