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PDBsum entry 1k4t
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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 1k4t calculated with MOLE 2.0 PDB id
1k4t
Pores calculated on whole structure Pores calculated excluding ligands
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22 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.57 1.57 39.3 -1.22 -0.50 14.1 80 3 1 3 1 2 0 0  DA 5 B DG 6 B DG 115 D DT 116 D
2 1.36 1.36 42.1 -1.63 -0.58 20.4 78 3 3 2 2 2 1 0  DA 5 B DG 6 B DA 113 D DA 114 D DG 115 D DT 116 D
3 2.99 2.99 42.0 -1.58 -0.47 19.4 82 5 2 1 3 1 1 0  DA 13 C DA 14 C DA 15 C DC 111 D DC 112 D
4 2.17 2.84 57.5 -1.53 -0.20 25.5 76 7 4 3 2 1 1 0  DA 17 C DT 109 D DT 110 D DC 111 D
5 2.19 2.19 58.2 -2.06 -0.63 22.6 80 5 4 2 1 0 1 0  DA 15 C DA 16 C DA 17 C DT 18 C DT 19 C DA 102 D
DC 111 D
6 2.18 2.18 61.7 -2.35 -0.59 27.2 80 6 2 1 1 1 0 0  DA 14 C DA 15 C DA 16 C DA 17 C DT 18 C DT 19 C D
A 102 D
7 1.92 2.04 64.6 -1.68 -0.66 19.1 86 5 4 3 2 1 0 0  DA 5 B DG 6 B DT 10 B TGP 11 C DG 12 C DA 13 C DA
14 C TTG 991 C DC 112 D DA 113 D DA 114 D DG 115
D DT 116 D
8 1.37 1.36 69.1 -1.77 -0.46 20.1 77 5 4 3 4 1 4 0  DT 10 B TGP 11 C DG 12 C TTG 991 C DT 110 D DC
111 D DC 112 D DA 113 D
9 2.18 2.53 69.4 -1.57 -0.36 21.1 81 7 3 3 4 1 1 0  DT 10 B TGP 11 C DG 12 C DA 13 C DA 14 C TTG 991
C DT 110 D DC 111 D DA 113 D
10 1.34 1.35 74.1 -1.58 -0.29 17.6 84 5 3 4 5 1 2 0  DA 13 C DA 14 C DA 15 C DA 16 C DA 17 C DT 18 C
DT 19 C DA 102 D DT 106 D DT 107 D DT 108 D
11 1.36 1.38 74.3 -1.59 -0.42 23.0 78 8 5 1 5 3 2 0  DT 10 B TGP 11 C DG 12 C DA 13 C DA 14 C TTG 991
C DC 112 D DA 113 D
12 1.66 1.72 74.7 -2.06 -0.33 23.6 80 9 3 4 3 2 1 0  DT 10 B TGP 11 C DG 12 C TTG 991 C DT 110 D DC
111 D DA 113 D
13 1.37 1.37 74.7 -1.94 -0.42 24.8 74 7 4 2 4 2 2 0  DT 10 B TGP 11 C DG 12 C TTG 991 C DT 110 D DC
111 D DC 112 D DA 113 D
14 1.98 2.04 75.4 -2.22 -0.49 24.1 77 6 5 4 2 2 1 0  DA 5 B DG 6 B DT 10 B TGP 11 C DG 12 C TTG 991 C
DT 110 D DC 111 D DC 112 D DA 113 D DA 114 D DG
115 D DT 116 D DT 121 D DT 122 D
15 1.33 1.34 77.9 -1.19 -0.36 12.9 87 7 4 7 9 0 1 0  DT 10 B TGP 11 C DG 12 C DA 13 C DA 14 C TTG 991
C DT 107 D DT 108 D DT 109 D DA 113 D
16 1.94 2.03 79.9 -2.01 -0.62 19.3 80 4 5 5 2 1 3 0  DA 5 B DG 6 B DT 10 B TGP 11 C DG 12 C TTG 991 C
DT 110 D DC 111 D DC 112 D DA 113 D DA 114 D DG
115 D DT 116 D
17 1.33 1.36 83.2 -1.67 -0.36 16.1 86 9 4 8 8 1 1 0  DT 10 B TGP 11 C DG 12 C TTG 991 C DT 107 D DT
108 D DT 109 D DA 113 D
18 1.31 1.33 87.9 -1.56 -0.42 14.7 84 6 6 9 7 1 2 0  DA 5 B DG 6 B DT 10 B TGP 11 C DG 12 C TTG 991 C
DT 107 D DT 108 D DT 109 D DC 112 D DA 113 D DA
114 D DG 115 D DT 116 D DT 121 D DT 122 D
19 1.40 1.41 87.2 -1.44 -0.39 15.6 82 7 5 7 9 1 3 0  DT 10 B TGP 11 C DG 12 C TTG 991 C DT 107 D DT
108 D DT 109 D DC 112 D DA 113 D
20 1.71 1.74 88.7 -1.94 -0.38 19.2 82 9 1 4 2 2 1 0  DT 10 B TGP 11 C DG 12 C DA 13 C DA 14 C DA 15 C
DA 16 C DA 17 C DT 18 C DT 19 C TTG 991 C DT 106
D DT 107 D DT 108 D DT 109 D DA 113 D
21 1.36 1.36 89.7 -1.50 -0.39 14.4 83 6 6 9 7 1 4 0  TGP 11 C DG 12 C DT 107 D DT 108 D DT 109 D DT
110 D DC 111 D
22 2.17 2.79 90.3 -1.98 -0.38 22.4 76 6 2 4 1 2 1 0  TGP 11 C DG 12 C DA 13 C DA 14 C DA 15 C DA 16 C
DA 17 C DT 18 C DT 19 C DA 102 D DT 106 D DT 107
D DT 108 D DT 109 D DT 110 D DC 111 D
23 1.37 1.37 92.0 -1.69 -0.38 17.8 83 8 5 8 7 1 1 0  TGP 11 C DG 12 C DT 107 D DT 108 D DT 109 D DT
110 D DC 111 D
24 1.95 2.08 93.2 -1.86 -0.56 16.9 79 4 3 5 1 2 2 0  DA 5 B DG 6 B DT 10 B TGP 11 C DG 12 C DA 13 C DA
14 C DA 15 C DA 16 C DA 17 C DT 18 C DT 19 C TTG
991 C DA 102 D DT 106 D DT 107 D DT 108 D DT 109
D DC 112 D DA 113 D DA 114 D DG 115 D DT 116 D
25 1.38 1.39 93.4 -1.70 -0.46 18.3 76 6 2 4 3 2 3 0  DT 10 B TGP 11 C DG 12 C DA 13 C DA 14 C DA 15 C
DA 16 C DA 17 C DT 18 C DT 19 C TTG 991 C DA 102
D DT 106 D DT 107 D DT 108 D DT 109 D DC 112 D DA
113 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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