PDBsum entry 1k2p

Tunnel analysis for: 1k2p calculated with

MOLE 2.0

PDB id

1k2p

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.14

1.57

26.1

-1.20

-0.27

14.3

76

3

1

4

2

4

1

0

2

1.12

1.56

30.1

0.04

-0.09

5.8

83

1

1

3

3

2

1

0

3

1.13

1.57

35.5

-1.42

-0.21

16.4

83

3

1

6

3

3

1

0

4

1.13

1.57

49.1

-1.24

-0.47

10.6

83

4

2

6

2

2

1

1

5

1.15

1.57

52.9

-1.60

-0.56

15.5

84

4

4

6

1

3

1

0

6

1.13

1.56

56.3

-1.02

-0.25

13.9

74

5

1

4

5

4

1

1

7

1.18

1.57

73.7

-0.12

-0.03

9.6

78

4

3

7

8

6

1

0

8

1.24

2.18

17.4

2.36

0.76

0.9

87

0

0

2

7

1

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.