PDBsum entry 1k17

Tunnel analysis for: 1k17 calculated with

MOLE 2.0

PDB id

1k17

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.42

2.22

19.1

-0.76

0.05

3.3

75

0

1

2

2

2

1

0

2

1.21

1.44

20.9

-0.64

-0.56

11.2

86

0

3

2

2

0

1

0

3

1.41

2.11

26.1

-0.89

0.58

4.5

63

1

1

2

2

6

0

1

4

1.41

2.20

28.5

-0.98

-0.15

10.7

76

1

1

2

3

2

1

0

5

1.28

1.42

27.7

-1.86

-0.44

26.5

81

2

1

1

1

1

0

1

6

1.45

2.09

21.4

2.08

0.62

1.1

73

0

0

1

11

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.