PDBsum entry 1jv2 Go to PDB code:  Pore analysis for: 1jv2 calculated with MOLE 2.0 PDB id 1jv2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.57 2.57 26.5 -2.52 -0.63 27.6 81 4 4 3 2 1 0 0   2 1.46 1.64 34.0 -1.72 -0.49 15.0 85 2 2 5 4 2 0 0   3 1.46 1.64 34.9 -1.72 -0.72 17.3 91 2 4 5 2 0 0 0   4 1.40 1.72 35.2 -0.45 -0.12 11.8 83 3 2 0 3 1 1 0  NAG 2 C 5 1.26 1.43 52.4 -1.80 -0.48 16.2 91 2 3 6 5 0 0 0  NAG 3320 B 6 1.47 1.64 55.8 -1.55 -0.63 17.4 90 4 6 7 5 0 1 0   7 2.54 2.54 57.1 -1.94 -0.60 24.5 85 7 7 4 4 0 1 0   8 2.76 3.52 59.4 -1.82 -0.60 20.1 83 7 7 4 5 1 1 0   9 1.27 1.43 60.7 -1.93 -0.38 16.6 83 4 2 6 5 2 0 0  NAG 3320 B 10 1.27 1.43 62.7 -2.00 -0.58 18.9 87 4 4 6 3 0 0 0  NAG 3320 B 11 1.28 1.43 71.3 -1.72 -0.51 19.0 89 5 5 8 5 0 1 0  NAG 3320 B 12 1.36 1.31 78.5 -1.32 -0.46 18.7 85 5 7 7 4 0 2 1  NAG 1 I NDG 2 I 13 1.18 1.26 102.1 -1.47 -0.56 17.7 87 7 8 11 6 0 3 1  NAG 1 I NDG 2 I 14 1.46 2.84 33.5 -0.40 -0.03 9.6 91 2 1 4 1 1 0 0  NAG 2 E 15 1.41 2.88 34.3 -1.35 -0.28 13.9 90 2 2 5 1 1 0 0  NAG 2 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.