PDBsum entry 1jpp Go to PDB code:  Tunnel analysis for: 1jpp calculated with MOLE 2.0 PDB id 1jpp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.39 28.5 1.67 0.36 3.3 81 1 0 1 8 0 1 0   2 1.20 1.50 29.6 2.15 0.54 3.0 94 1 0 3 11 0 0 0   3 1.21 1.71 20.6 -0.27 0.04 22.5 79 2 2 0 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.