PDBsum entry 1jms Go to PDB code:  Tunnel analysis for: 1jms calculated with MOLE 2.0 PDB id 1jms Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 2.23 35.3 0.18 0.37 10.7 74 4 2 1 7 3 0 1   2 1.13 2.21 44.0 -1.06 0.07 20.7 77 6 4 1 5 2 0 1   3 1.73 2.16 15.0 -1.65 -0.07 34.8 85 3 1 2 2 0 0 0   4 1.22 1.40 20.0 1.92 0.59 6.3 68 1 1 1 6 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.