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PDBsum entry 1jdj

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Protein chain A PDB id
1jdj
Protein chain A highlighted
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Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
1 sheet
5 beta alpha beta units
1 beta hairpin
1 beta bulge
8 strands
17 helices
25 helix-helix interacs
16 beta turns
3 gamma turns
Catalytic residues
K210-T267
S207
  
Chain (346 residues)

UniProt code: P90551 (GPDA_LEIME)   [Pfam]

structural classification (2 domains) :
Domain Links CATH no.   Class Architecture
1 3.40.50.720 = Alpha Beta 3-Layer(aba) Sandwich
2 1.10.1040.10 = Mainly Alpha Orthogonal Bundle

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
CSA annotation:   
    catalytic residue
Residue contacts:   
    to ligand
PDB SITE records:   
 AC1  AC2

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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