spacer
spacer

PDBsum entry 1jdj

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 1jdj calculated with MOLE 2.0 PDB id
1jdj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.99 5.8 1.33 -0.01 1.1 96 0 0 1 4 0 0 0  
2 1.95 8.8 -0.88 -0.64 17.5 96 0 2 1 3 0 0 0  
3 1.82 9.5 -1.48 -0.45 18.4 78 2 1 1 1 0 0 0  
4 1.40 11.7 -0.39 -0.29 10.3 84 2 0 2 1 0 1 0  
5 2.56 6.3 -0.53 -0.48 2.5 87 0 0 2 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer