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PDBsum entry 1jdb

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Protein chain C    -    representing identical chains: F I L PDB id
1jdb
Protein chain C highlighted
(click to view)
 
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
2 sheets
4 beta alpha beta units
4 beta hairpins
1 psi loop
7 beta bulges
17 strands
13 helices
7 helix-helix interacs
33 beta turns
2 gamma turns
Catalytic residues
C269-E355-H353
C269-H353
Chains 1057 a.a.
Chains 379 a.a.
  
Residue conservation: Chain & (379 residues)

UniProt code: P00968   [Pfam]
UniProt code: P0A6F1   [Pfam]

Sequence coloured by residue conservation:

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
CSA annotation:   
    catalytic residue
Residue contacts:   
    to ligand     to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9  BC1
 BC2  BC3  BC4  BC5  BC6
 BC7  BC8  BC9  CC1  CC2
 CC3  CC4  CC5  CC6  CC7
 CC8  CC9  DC1  DC2  DC3
 DC4  DC5  DC6  DC7  DC8
 DC9  EC1  EC2  EC3  EC4
 EC5  EC6  EC7  EC8  EC9
 FC1  FC2  FC3  FC4  FC5
 FC6  FC7  FC8  FC9  GC1
 GC2  GC3  GC4  GC5  GC6
 GC7  GC8  GC9  HC1  HC2
 HC3  HC4  HC5  HC6  HC7
 HC8  HC9  IC1  IC2  IC3
 IC4  IC5  IC6  IC7  IC8
 IC9  JC1  JC2  JC3  JC4
 JC5  JC6  JC7  JC8  JC9
 KC1  KC2  KC3  KC4  KC5
 KC6  KC7  KC8  KC9  LC1
 LC2  LC3  LC4  LC5  LC6
 LC7  LC8
Conservation colouring:     Low 1 2 3 4 5 6 7 8 9 High
View:
Protein surface showing most poorly (1) and highly conserved (7 8 9) regions
ConSurf representation of conserved regions: 1 2 3 4 5 6 7 8 9
Download tab-separated text file of ConSurf analysis
Generate Raster3D image of surface coloured by conservation
ConSurf-DB ConSurf-DB data (including mult seq alignment) for 1jdb, chain C
Residue conservation calculated by ConSurf-DB.
  
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