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PDBsum entry 1jd9

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Protein chain A PDB id
1jd9
Protein chain A highlighted
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Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
7 sheets
4 beta alpha beta units
5 beta hairpins
4 beta bulges
22 strands
20 helices
16 helix-helix interacs
38 beta turns
6 gamma turns
4 disulphides
Catalytic residues
D174-Q199
D174-D264-E200
D174-E200
D174-D203
D174-D264-E207
  
Chain (448 residues)

UniProt code: P29957 (AMY_PSEHA)   [Pfam]

structural classification (2 domains) :
Domain Links CATH no.   Class Architecture
1 3.20.20.80 = Alpha Beta Alpha-Beta Barrel
2 2.60.40.1180 = Mainly Beta Sandwich

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Disulphides:   
    disulphide bond
CSA annotation:   
    catalytic residue
Residue contacts:   
    to metal
PDB SITE records:   
 AC1

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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