PDBsum entry 1jd2 Go to PDB code:  Pore analysis for: 1jd2 calculated with MOLE 2.0 PDB id 1jd2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.49 2.06 83.3 -1.27 -0.26 20.2 84 10 3 5 7 1 2 0   2 2.06 3.71 100.7 -2.60 -0.43 29.9 79 13 9 6 6 8 0 0   3 1.67 2.06 127.8 -2.82 -0.50 32.9 80 18 9 8 5 3 1 0   4 1.38 1.40 130.6 -2.38 -0.48 26.2 81 15 13 10 5 6 1 0   5 1.50 2.47 137.2 -2.21 -0.44 26.8 80 15 14 9 9 5 2 0   6 1.32 1.37 145.2 -2.07 -0.44 25.5 83 18 14 11 10 5 1 0   7 1.32 2.77 153.4 -1.66 -0.30 24.9 84 12 12 8 11 4 0 1   8 1.46 1.88 155.2 -1.82 -0.43 25.7 81 12 11 4 6 1 4 1   9 1.87 4.10 155.5 -2.04 -0.36 27.1 78 18 13 7 13 4 2 0   10 1.25 1.34 160.8 -1.51 -0.31 21.9 84 15 11 10 9 3 2 0   11 1.35 1.49 166.1 -1.00 -0.29 16.6 89 11 7 11 14 2 0 0   12 1.22 1.40 182.8 -1.80 -0.34 24.9 79 18 16 11 17 6 2 0   13 1.74 4.44 181.4 -2.29 -0.44 24.5 83 18 7 13 5 6 0 0   14 1.83 1.85 185.7 -2.31 -0.42 25.0 83 20 6 15 6 6 1 0   15 1.25 1.25 199.2 -2.02 -0.40 23.2 84 19 10 16 9 8 0 0   16 1.32 1.22 205.4 -1.82 -0.35 25.7 83 23 13 12 15 5 1 0   17 1.84 2.06 201.1 -2.56 -0.43 26.6 82 21 10 15 6 8 1 0   18 1.87 4.42 201.4 -2.55 -0.47 26.4 82 21 13 13 5 8 0 0   19 1.25 1.48 218.9 -1.67 -0.33 23.8 83 22 17 14 18 8 0 0   20 1.34 1.30 226.0 -1.29 -0.24 21.8 80 21 17 10 23 7 2 0   21 1.60 5.45 236.3 -1.99 -0.34 23.3 80 20 13 14 14 9 2 0   22 1.32 1.58 232.5 -2.17 -0.41 23.1 82 22 16 19 11 10 0 0   23 1.64 2.44 240.9 -2.38 -0.45 24.9 81 21 14 17 8 7 2 0   24 1.62 3.62 245.2 -2.44 -0.45 25.9 81 24 13 19 9 7 3 0   25 1.28 1.26 253.6 -1.64 -0.32 21.4 84 23 11 16 15 9 0 0   26 1.48 1.35 258.7 -2.15 -0.41 23.7 82 22 17 21 12 9 2 0   27 1.25 1.26 274.4 -1.85 -0.34 22.5 83 24 15 17 15 11 0 0   28 1.34 1.44 287.4 -1.98 -0.35 23.7 84 25 12 15 16 9 1 0   29 1.37 2.82 291.8 -2.05 -0.36 24.4 83 27 11 18 17 9 2 0   30 0.20 0.46 487.2 -2.06 -0.46 23.8 81 28 21 19 8 11 2 0  MG 2 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.