PDBsum entry 1j59 Go to PDB code:  Pore analysis for: 1j59 calculated with MOLE 2.0 PDB id 1j59 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.09 3.25 25.3 -2.28 -0.83 20.4 80 4 2 2 0 0 0 0  DG 3 C DC -3 F DT -2 F DC 7 F 2 1.25 2.56 34.4 -1.52 -0.22 19.5 81 3 4 3 3 1 0 0  DC -3 F DT -2 F 3 1.43 1.43 35.6 -0.95 -0.78 11.6 87 1 4 0 1 0 0 0  DG 7 C DA 12 D DT 13 D DG 14 D DT 8 F DG 9 F DT 10 F DA 11 F 4 1.89 1.89 43.2 -1.01 -0.81 11.7 83 1 3 0 0 0 0 0  DA 12 D DT 13 D DG 14 D DT 15 D DC 16 D DC 14 E DC 7 F DT 8 F DG 9 F DT 10 F DA 11 F DT 12 F DA 13 F 5 1.73 1.96 64.5 -0.73 -0.34 15.9 85 3 5 9 8 0 1 0  CMP 762 A DA 12 D DT 8 F 6 1.22 2.68 71.4 -1.67 -0.54 16.4 83 7 4 5 2 1 0 0  DA 12 D DT 21 D DT 22 D DT 23 D DT 24 D DT 17 E DG 18 E DT 19 E DG 20 E DC 7 F DT 8 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.