PDBsum entry 1j2f Go to PDB code:  Tunnel analysis for: 1j2f calculated with MOLE 2.0 PDB id 1j2f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 0.84 1.27 16.8 -0.79 -0.28 10.0 88 1 1 1 2 1 0 0   2 0.84 1.27 17.9 -0.66 -0.24 9.0 88 1 1 1 2 1 0 0   3 1.53 1.77 19.1 -1.39 -0.60 14.8 85 2 2 1 1 1 0 0   4 1.52 1.52 20.2 -1.23 -0.52 13.3 85 2 2 1 1 1 0 0   5 1.64 1.64 24.8 -0.35 -0.43 2.7 75 0 0 2 2 3 0 0   6 1.52 1.52 25.9 -0.31 -0.40 2.7 75 0 0 2 2 3 0 0   7 1.24 1.24 18.5 -0.16 -0.19 10.6 69 1 0 0 2 1 1 0   8 1.37 1.41 15.2 -1.81 -0.38 14.1 75 1 1 2 0 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.