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PDBsum entry 1ig9

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 1ig9 calculated with MOLE 2.0 PDB id
1ig9
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.41 135.5 -0.98 -0.15 17.9 79 9 10 8 16 10 1 0  CA 1004 A DA 1 T DC 2 T
2 1.30 1.32 43.1 -1.97 -0.74 24.3 85 5 2 1 0 0 0 0  DG 104 P DA 113 P DA 7 T DA 8 T DG 9 T DC 10 T DA
11 T
3 1.31 1.32 44.2 -1.52 -0.59 17.9 77 6 1 2 0 2 1 0  DG 109 P DC 110 P DT 111 P DA 113 P DA 7 T DA 8 T
DG 9 T DC 10 T DA 11 T DG 12 T
4 1.58 2.07 15.7 0.75 0.57 10.1 83 2 2 0 6 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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