spacer
spacer

PDBsum entry 1if9

Go to PDB code: 
Top Page protein ligands metals links
Tunnel analysis for: 1if9 calculated with MOLE 2.0 PDB id
1if9
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.81 11.8 -2.20 -0.16 25.3 82 3 0 2 1 2 1 0  555 SBB A
2 1.65 12.5 -2.04 -0.15 24.1 82 3 0 2 1 2 1 0  555 SBB A
3 1.30 6.9 1.58 0.35 5.0 92 0 1 0 4 0 0 0  
4 1.32 13.8 0.93 0.08 1.7 91 1 0 1 4 0 0 0  
5 2.05 7.3 -1.21 -0.33 24.8 67 2 1 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer