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PDBsum entry 1i8l

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Immune system PDB id
1i8l

 

 

 

 

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Contents
Protein chains
199 a.a. *
118 a.a. *
Ligands
NAG ×18
MAN ×2
* Residue conservation analysis
PDB id:
1i8l
Name: Immune system
Title: Human b7-1/ctla-4 co-stimulatory complex
Structure: T lymphocyte activation antigen cd80. Chain: a, b. Fragment: extracellular domain, residues 35-242. Synonym: activation b7-1 antigen, ctla-4 counter-receptor b7.1. Engineered: yes. Cytotoxic t-lymphocyte protein 4. Chain: c, d. Fragment: extracellular domain, residues 36-161. Synonym: ctla-4, cytotoxic t-lymphocyte-associated antigen 4.
Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: cricetulus griseus. Expression_system_taxid: 10029. Expression_system_taxid: 10029
Resolution:
3.00Å     R-factor:   0.229     R-free:   0.257
Authors: C.C.Stamper,W.S.Somers,L.Mosyak
Key ref:
C.C.Stamper et al. (2001). Crystal structure of the B7-1/CTLA-4 complex that inhibits human immune responses. Nature, 410, 608-611. PubMed id: 11279502 DOI: 10.1038/35069118
Date:
14-Mar-01     Release date:   04-Apr-01    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
P33681  (CD80_HUMAN) -  T-lymphocyte activation antigen CD80 from Homo sapiens
Seq:
Struc:
288 a.a.
199 a.a.
Protein chains
P16410  (CTLA4_HUMAN) -  Cytotoxic T-lymphocyte protein 4 from Homo sapiens
Seq:
Struc:
223 a.a.
118 a.a.*
Key:    Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 

 
DOI no: 10.1038/35069118 Nature 410:608-611 (2001)
PubMed id: 11279502  
 
 
Crystal structure of the B7-1/CTLA-4 complex that inhibits human immune responses.
C.C.Stamper, Y.Zhang, J.F.Tobin, D.V.Erbe, S.Ikemizu, S.J.Davis, M.L.Stahl, J.Seehra, W.S.Somers, L.Mosyak.
 
  ABSTRACT  
 
Optimal immune responses require both an antigen-specific and a co-stimulatory signal. The shared ligands B7-1 and B7-2 on antigen-presenting cells deliver the co-stimulatory signal through CD28 and CTLA-4 on T cells. Signalling through CD28 augments the T-cell response, whereas CTLA-4 signalling attenuates it. Numerous animal studies and recent clinical trials indicate that manipulating these interactions holds considerable promise for immunotherapy. With the consequences of these signals well established, and details of the downstream signalling events emerging, understanding the molecular nature of these extracellular interactions becomes crucial. Here we report the crystal structure of the human CTLA-4/B7-1 co-stimulatory complex at 3.0 A resolution. In contrast to other interacting cell-surface molecules, the relatively small CTLA-4/B7-1 binding interface exhibits an unusually high degree of shape complementarity. CTLA-4 forms homodimers through a newly defined interface of highly conserved residues. In the crystal lattice, CTLA-4 and B7-1 pack in a strikingly periodic arrangement in which bivalent CTLA-4 homodimers bridge bivalent B7-1 homodimers. This zipper-like oligomerization provides the structural basis for forming unusually stable signalling complexes at the T-cell surface, underscoring the importance of potent inhibitory signalling in human immune responses.
 
  Selected figure(s)  
 
Figure 2.
Figure 2: Overview of receptor -ligand interactions. a, Ribbon diagram showing orthogonal interaction between sCTLA-4 (cyan) and sB7-1 (purple) monomers. Also shown is the molecular surface representation (white transparent) of the ligand-binding domain of sB7-1 to emphasize the high geometric match between the two interacting surfaces. b, Direct receptor -ligand contacts. The 99MYPPPY104 loop of sCTLA-4 is buried in a shallow depression of the sB7-1 GFCC' surface. Colour coding is as in a. Three out of five hydrogen bonds formed across the -sheets of the interacting domains are depicted as red dashed lines. Several other side chains on CTLA-4 and B7-1 (not shown) may contribute to the binding through appreciable, but not direct, contacts formed on the periphery of the binding interface. Figure prepared with BobScript30.
Figure 3.
Figure 3: Molecular association of sCTLA-4 and sB7-1 in the crystal lattice. Shown are 'skewed zipper' arrays in which sCTLA-4/sB7-1 complexes would be evenly spaced along membrane surfaces with a separation of 105 Å. In the perpendicular direction, across membranes, ligated receptors would span 140 Å. Geometrically, sugar chains attached at Asn 173 on B7-1 (bottom) are close to the cell membrane, implying their potential involvement in interaction with the membrane, perhaps by stabilizing the orientation of the B7-1 dimers. APC, antigen-presenting cell. Figure prepared with RIBBONS29.
 
  The above figures are reprinted by permission from Macmillan Publishers Ltd: Nature (2001, 410, 608-611) copyright 2001.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

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CD28-B7 bidirectional signaling: a two-way street to activation.
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Assembling atomic resolution views of the immunological synapse.
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Crystal structure of the human myeloid cell activating receptor TREM-1.
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PDB code: 1q8m
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  J Exp Med, 197, 1083-1091.  
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PDB code: 1ncn
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The two-signal model of T-cell activation after 30 years.
  Transplantation, 73, S31-S35.  
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The B7-CD28 superfamily.
  Nat Rev Immunol, 2, 116-126.  
12196291 A.V.Collins, D.W.Brodie, R.J.Gilbert, A.Iaboni, R.Manso-Sancho, B.Walse, D.I.Stuart, P.A.van der Merwe, and S.J.Davis (2002).
The interaction properties of costimulatory molecules revisited.
  Immunity, 17, 201-210.  
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The B7 family of ligands and its receptors: new pathways for costimulation and inhibition of immune responses.
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Small molecule ligands define a binding site on the immune regulatory protein B7.1.
  J Biol Chem, 277, 7363-7368.  
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Dynamics of the immunological synapse: finding, establishing and solidifying a connection.
  Curr Opin Immunol, 14, 66-74.  
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Structural and thermodynamic correlates of T cell signaling.
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  J Exp Med, 195, 1337-1347.  
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Negative co-receptors on lymphocytes.
  Curr Opin Immunol, 14, 391-396.  
12501157 R.L.Rich, and D.G.Myszka (2002).
Survey of the year 2001 commercial optical biosensor literature.
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12167647 S.Lazetic, S.R.Leong, J.C.Chang, R.Ong, G.Dawes, and J.Punnonen (2002).
Chimeric co-stimulatory molecules that selectively act through CD28 or CTLA-4 on human T cells.
  J Biol Chem, 277, 38660-38668.  
11905831 M.L.Alegre, K.A.Frauwirth, and C.B.Thompson (2001).
T-cell regulation by CD28 and CTLA-4.
  Nat Rev Immunol, 1, 220-228.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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