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PDBsum entry 1i84

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protein Protein-protein interface(s) links
Contractile protein PDB id
1i84
Contents
Protein chains
909 a.a. *
148 a.a. *
138 a.a.* *
* Residue conservation analysis
* C-alpha coords only
PDB id:
1i84
Name: Contractile protein
Title: Cryo-em structure of the heavy meromyosin subfragment of chicken gizzard smooth muscle myosin with regulatory light chain in the dephosphorylated state. Only c alphas provided for regulatory light chain. Only backbone atoms provided for s2 fragment.
Structure: Smooth muscle myosin heavy chain. Chain: s, v. Fragment: meromyosin subfragment. S1 and s2 fragments.. Synonym: myosin heavy chain, gizzard smooth muscle. Engineered: yes. Smooth muscle myosin essential light chain. Chain: t, w. Fragment: s1 fragment. Synonym: elc, myosin alkali light chain.
Source: Gallus gallus. Chicken. Organism_taxid: 9031. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Other_details: flag-tag at c-terminus.
Biol. unit: Hexamer (from PQS)
Authors: T.Wendt,D.Taylor,K.M.Trybus,K.Taylor
Key ref:
T.Wendt et al. (2001). Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2. Proc Natl Acad Sci U S A, 98, 4361-4366. PubMed id: 11287639 DOI: 10.1073/pnas.071051098
Date:
12-Mar-01     Release date:   28-Mar-01    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
P10587  (MYH11_CHICK) -  Myosin-11 from Gallus gallus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1979 a.a.
909 a.a.*
Protein chains
P02607  (MYL6_CHICK) -  Myosin light polypeptide 6 from Gallus gallus
Seq:
Struc:
151 a.a.
148 a.a.
Protein chains
P02609  (MYL11_CHICK) -  Myosin regulatory light chain 11 from Gallus gallus
Seq:
Struc:
168 a.a.
138 a.a.*
Key:    Secondary structure
* PDB and UniProt seqs differ at 33 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: Chains S, V: E.C.3.6.1.32  - Transferred entry: 5.6.1.8.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.1073/pnas.071051098 Proc Natl Acad Sci U S A 98:4361-4366 (2001)
PubMed id: 11287639  
 
 
Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2.
T.Wendt, D.Taylor, K.M.Trybus, K.Taylor.
 
  ABSTRACT  
 
Regulation of the actin-activated ATPase of smooth muscle myosin II is known to involve an interaction between the two heads that is controlled by phosphorylation of the regulatory light chain. However, the three-dimensional structure of this inactivated form has been unknown. We have used a lipid monolayer to obtain two-dimensional crystalline arrays of the unphosphorylated inactive form of smooth muscle heavy meromyosin suitable for structural studies by electron cryomicroscopy of unstained, frozen-hydrated specimens. The three-dimensional structure reveals an asymmetric interaction between the two myosin heads. The ATPase activity of one head is sterically "blocked" because part of its actin-binding interface is positioned onto the converter domain of the second head. ATPase activity of the second head, which can bind actin, appears to be inhibited through stabilization of converter domain movements needed to release phosphate and achieve strong actin binding. When the subfragment 2 domain of heavy meromyosin is oriented as it would be in an actomyosin filament lattice, the position of the heads is very different from that needed to bind actin, suggesting an additional contribution to ATPase inhibition in situ.
 
  Selected figure(s)  
 
Figure 3.
Fig. 3. Docking of unphosphorylated HMM onto actin. (A) The "free" head of the HMM model is oriented on actin by using the actin-binding domain of rigor skeletal muscle actomyosin (Inset) as the reference. The smooth muscle S1 with a transition state analog at the active site appears with the lever arm up (15) in contrast to the lever arm down-postpowerstroke conformation of skeletal muscle actomyosin (35). The HMM model, when oriented via the actin-binding domain, verifies that one head can interact with actin without steric hindrance from the second head. The orientation of the double-headed myosin in B represents the arrangement with the S2[lll] segment oriented toward the direction of force transmission, as would occur within the muscle lattice. The head orientations in this configuration do not favor actin binding by either head.
Figure 4.
Fig. 4. Diagram illustrating a model for the structural changes that occur on activation of smooth muscle myosin. (A) In the "off" state, the two heads of myosin are in an orientation that is disadvantageous for actin binding by either head. (B) On phosphorylation of the RLC, the head-head interaction is interrupted, and both can search independently for actin monomers suitably placed for binding. (C) Myosin heads bind actin in the prepowerstroke position, which on filament sliding will transform to the rigor-like configuration that characterizes the end of the powerstroke. Note that the initial attachment to actin is likely to be considerably less ordered than implied by the cartoon (36).
 
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
21419133 H.S.Jung, N.Billington, K.Thirumurugan, B.Salzameda, C.R.Cremo, J.M.Chalovich, P.D.Chantler, and P.J.Knight (2011).
Role of the tail in the regulated state of myosin 2.
  J Mol Biol, 408, 863-878.  
21149681 J.H.Brown, V.S.Kumar, E.O'Neall-Hennessey, L.Reshetnikova, H.Robinson, M.Nguyen-McCarty, A.G.Szent-Györgyi, and C.Cohen (2011).
Visualizing key hinges and a potential major source of compliance in the lever arm of myosin.
  Proc Natl Acad Sci U S A, 108, 114-119.
PDB code: 3pn7
21177429 O.Pylypenko, and A.M.Houdusse (2011).
Essential "ankle" in the myosin lever arm.
  Proc Natl Acad Sci U S A, 108, 5-6.  
20711642 A.Kengyel, W.A.Wolf, R.L.Chisholm, and J.R.Sellers (2010).
Nonmuscle myosin IIA with a GFP fused to the N-terminus of the regulatory light chain is regulated normally.
  J Muscle Res Cell Motil, 31, 163-170.  
  20634984 C.Gorba, and F.Tama (2010).
Normal Mode Flexible Fitting of High-Resolution Structures of Biological Molecules Toward SAXS Data.
  Bioinform Biol Insights, 4, 43-54.  
20404208 D.Kast, L.M.Espinoza-Fonseca, C.Yi, and D.D.Thomas (2010).
Phosphorylation-induced structural changes in smooth muscle myosin regulatory light chain.
  Proc Natl Acad Sci U S A, 107, 8207-8212.  
20039646 N.Adamek, A.Lieto-Trivedi, M.A.Geeves, and L.M.Coluccio (2010).
Modification of loop 1 affects the nucleotide binding properties of Myo1c, the adaptation motor in the inner ear.
  Biochemistry, 49, 958-971.  
19769984 D.M.Himmel, S.Mui, E.O'Neall-Hennessey, A.G.Szent-Györgyi, and C.Cohen (2009).
The on-off switch in regulated myosins: different triggers but related mechanisms.
  J Mol Biol, 394, 496-505.
PDB codes: 3jtd 3jvt
19635572 G.P.Farman, M.S.Miller, M.C.Reedy, F.N.Soto-Adames, J.O.Vigoreaux, D.W.Maughan, and T.C.Irving (2009).
Phosphorylation and the N-terminal extension of the regulatory light chain help orient and align the myosin heads in Drosophila flight muscle.
  J Struct Biol, 168, 240-249.  
19851336 M.Vicente-Manzanares, X.Ma, R.S.Adelstein, and A.R.Horwitz (2009).
Non-muscle myosin II takes centre stage in cell adhesion and migration.
  Nat Rev Mol Cell Biol, 10, 778-790.  
19423668 N.Umeki, H.S.Jung, S.Watanabe, T.Sakai, X.D.Li, R.Ikebe, R.Craig, and M.Ikebe (2009).
The tail binds to the head-neck domain, inhibiting ATPase activity of myosin VIIA.
  Proc Natl Acad Sci U S A, 106, 8483-8488.  
19240025 S.S.Jana, K.Y.Kim, J.Mao, S.Kawamoto, J.R.Sellers, and R.S.Adelstein (2009).
An alternatively spliced isoform of non-muscle myosin II-C is not regulated by myosin light chain phosphorylation.
  J Biol Chem, 284, 11563-11571.  
19419961 S.Walcott, P.M.Fagnant, K.M.Trybus, and D.M.Warshaw (2009).
Smooth muscle heavy meromyosin phosphorylated on one of its two heads supports force and motion.
  J Biol Chem, 284, 18244-18251.  
18621839 A.C.Knowles, R.E.Ferguson, B.D.Brandmeier, Y.B.Sun, D.R.Trentham, and M.Irving (2008).
Orientation of the essential light chain region of myosin in relaxed, active, and rigor muscle.
  Biophys J, 95, 3882-3891.  
17993489 C.Gorba, O.Miyashita, and F.Tama (2008).
Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data.
  Biophys J, 94, 1589-1599.  
18585394 F.Q.Zhao, and R.Craig (2008).
Millisecond time-resolved changes occurring in Ca2+-regulated myosin filaments upon relaxation.
  J Mol Biol, 381, 256-260.  
18599626 F.Q.Zhao, R.Padrón, and R.Craig (2008).
Blebbistatin stabilizes the helical order of myosin filaments by promoting the switch 2 closed state.
  Biophys J, 95, 3322-3329.  
18472277 H.A.Al-Khayat, E.P.Morris, R.W.Kensler, and J.M.Squire (2008).
Myosin filament 3D structure in mammalian cardiac muscle.
  J Struct Biol, 163, 117-126.  
18413616 H.S.Jung, S.A.Burgess, N.Billington, M.Colegrave, H.Patel, J.M.Chalovich, P.D.Chantler, and P.J.Knight (2008).
Conservation of the regulated structure of folded myosin 2 in species separated by at least 600 million years of independent evolution.
  Proc Natl Acad Sci U S A, 105, 6022-6026.  
18495867 H.S.Jung, S.Komatsu, M.Ikebe, and R.Craig (2008).
Head-head and head-tail interaction: a general mechanism for switching off myosin II activity in cells.
  Mol Biol Cell, 19, 3234-3242.  
18408003 H.Tanaka, K.Homma, H.D.White, T.Yanagida, and M.Ikebe (2008).
Smooth muscle myosin phosphorylated at single head shows sustained mechanical activity.
  J Biol Chem, 283, 15611-15618.  
18155233 J.H.Brown, Y.Yang, L.Reshetnikova, S.Gourinath, D.Süveges, J.Kardos, F.Hóbor, R.Reutzel, L.Nyitray, and C.Cohen (2008).
An unstable head-rod junction may promote folding into the compact off-state conformation of regulated myosins.
  J Mol Biol, 375, 1434-1443.
PDB codes: 3bas 3bat
18060863 K.Y.Kim, S.Kawamoto, J.Bao, J.R.Sellers, and R.S.Adelstein (2008).
The B2 alternatively spliced isoform of nonmuscle myosin II-B lacks actin-activated MgATPase activity and in vitro motility.
  Biochem Biophys Res Commun, 369, 124-134.  
18951904 L.Alamo, W.Wriggers, A.Pinto, F.Bártoli, L.Salazar, F.Q.Zhao, R.Craig, and R.Padrón (2008).
Three-dimensional reconstruction of tarantula myosin filaments suggests how phosphorylation may regulate myosin activity.
  J Mol Biol, 384, 780-797.
PDB code: 3dtp
18252826 M.E.Zoghbi, J.L.Woodhead, R.L.Moss, and R.Craig (2008).
Three-dimensional structure of vertebrate cardiac muscle myosin filaments.
  Proc Natl Acad Sci U S A, 105, 2386-2390.  
18849406 M.Orzechowski, and F.Tama (2008).
Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations.
  Biophys J, 95, 5692-5705.  
18796164 P.Alhopuro, A.Karhu, R.Winqvist, K.Waltering, T.Visakorpi, and L.A.Aaltonen (2008).
Somatic mutation analysis of MYH11 in breast and prostate cancer.
  BMC Cancer, 8, 263.  
18391202 P.Alhopuro, D.Phichith, S.Tuupanen, H.Sammalkorpi, M.Nybondas, J.Saharinen, J.P.Robinson, Z.Yang, L.Q.Chen, T.Orntoft, J.P.Mecklin, H.Järvinen, C.Eng, G.Moeslein, D.Shibata, R.S.Houlston, A.Lucassen, I.P.Tomlinson, V.Launonen, A.Ristimäki, D.Arango, A.Karhu, H.L.Sweeney, and L.A.Aaltonen (2008).
Unregulated smooth-muscle myosin in human intestinal neoplasia.
  Proc Natl Acad Sci U S A, 105, 5513-5518.  
18216256 X.D.Li, H.S.Jung, Q.Wang, R.Ikebe, R.Craig, and M.Ikebe (2008).
The globular tail domain puts on the brake to stop the ATPase cycle of myosin Va.
  Proc Natl Acad Sci U S A, 105, 1140-1145.  
17561414 D.W.Taylor, D.F.Kelly, A.Cheng, and K.A.Taylor (2007).
On the freezing and identification of lipid monolayer 2-D arrays for cryoelectron microscopy.
  J Struct Biol, 160, 305-312.  
17638580 J.E.Norville, D.F.Kelly, T.F.Knight, A.M.Belcher, and T.Walz (2007).
7A projection map of the S-layer protein sbpA obtained with trehalose-embedded monolayer crystals.
  J Struct Biol, 160, 313-323.  
18427938 J.R.Sellers, and P.J.Knight (2007).
Folding and regulation in myosins II and V.
  J Muscle Res Cell Motil, 28, 363-370.  
17208425 K.A.Taylor (2007).
Regulation and recycling of myosin V.
  Curr Opin Cell Biol, 19, 67-74.  
17545237 L.M.Espinoza-Fonseca, D.Kast, and D.D.Thomas (2007).
Molecular dynamics simulations reveal a disorder-to-order transition on phosphorylation of smooth muscle myosin.
  Biophys J, 93, 2083-2090.  
16618116 A.S.Rovner, P.M.Fagnant, and K.M.Trybus (2006).
Phosphorylation of a single head of smooth muscle myosin activates the whole molecule.
  Biochemistry, 45, 5280-5289.  
16625208 J.Liu, D.W.Taylor, E.B.Krementsova, K.M.Trybus, and K.A.Taylor (2006).
Three-dimensional structure of the myosin V inhibited state by cryoelectron tomography.
  Nature, 442, 208-211.
PDB code: 2dfs
16838021 K.Thirumurugan, T.Sakamoto, J.A.Hammer, J.R.Sellers, and P.J.Knight (2006).
The cargo-binding domain regulates structure and activity of myosin 5.
  Nature, 442, 212-215.  
16437158 N.Pashkova, Y.Jin, S.Ramaswamy, and L.S.Weisman (2006).
Structural basis for myosin V discrimination between distinct cargoes.
  EMBO J, 25, 693-700.
PDB code: 2f6h
17075132 N.Tochio, S.Koshiba, N.Kobayashi, M.Inoue, T.Yabuki, M.Aoki, E.Seki, T.Matsuda, Y.Tomo, Y.Motoda, A.Kobayashi, A.Tanaka, Y.Hayashizaki, T.Terada, M.Shirouzu, T.Kigawa, and S.Yokoyama (2006).
Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.
  Protein Sci, 15, 2534-2543.
PDB code: 1ul7
16563742 R.Craig, and J.L.Woodhead (2006).
Structure and function of myosin filaments.
  Curr Opin Struct Biol, 16, 204-212.  
16404592 V.Azzu, D.Yadin, H.Patel, F.Fraternali, P.D.Chantler, and J.E.Molloy (2006).
Calcium regulates scallop muscle by changing myosin flexibility.
  Eur Biophys J, 35, 302-312.  
17095604 W.Blankenfeldt, N.H.Thomä, J.S.Wray, M.Gautel, and I.Schlichting (2006).
Crystal structures of human cardiac beta-myosin II S2-Delta provide insight into the functional role of the S2 subfragment.
  Proc Natl Acad Sci U S A, 103, 17713-17717.
PDB codes: 2fxm 2fxo
15766540 F.Fabiola, and M.S.Chapman (2005).
Fitting of high-resolution structures into electron microscopy reconstruction images.
  Structure, 13, 389-400.  
16121187 J.L.Woodhead, F.Q.Zhao, R.Craig, E.H.Egelman, L.Alamo, and R.Padrón (2005).
Atomic model of a myosin filament in the relaxed state.
  Nature, 436, 1195-1199.  
15753305 W.D.Nelson, S.E.Blakely, Y.E.Nesmelov, and D.D.Thomas (2005).
Site-directed spin labeling reveals a conformational switch in the phosphorylation domain of smooth muscle myosin.
  Proc Natl Acad Sci U S A, 102, 4000-4005.  
15007063 D.N.Krementsov, E.B.Krementsova, and K.M.Trybus (2004).
Myosin V: regulation by calcium, calmodulin, and the tail domain.
  J Cell Biol, 164, 877-886.  
15256600 J.J.Sherwood, G.S.Waller, D.M.Warshaw, and S.Lowey (2004).
A point mutation in the regulatory light chain reduces the step size of skeletal muscle myosin.
  Proc Natl Acad Sci U S A, 101, 10973-10978.  
12885652 M.Nyitrai, W.F.Stafford, A.G.Szent-Györgyi, and M.A.Geeves (2003).
Ionic interactions play a role in the regulatory mechanism of scallop heavy meromyosin.
  Biophys J, 85, 1053-1062.  
12900396 N.M.Kad, A.S.Rovner, P.M.Fagnant, P.B.Joel, G.G.Kennedy, J.B.Patlak, D.M.Warshaw, and K.M.Trybus (2003).
A mutant heterodimeric myosin with one inactive head generates maximal displacement.
  J Cell Biol, 162, 481-488.  
14596602 T.Chakrabarty, C.Yengo, C.Baldacchino, L.Q.Chen, H.L.Sweeney, and P.R.Selvin (2003).
Does the S2 rod of myosin II uncoil upon two-headed binding to actin? A leucine-zippered HMM study.
  Biochemistry, 42, 12886-12892.  
11972024 T.Chakrabarty, M.Xiao, R.Cooke, and P.R.Selvin (2002).
Holding two heads together: stability of the myosin II rod measured by resonance energy transfer between the heads.
  Proc Natl Acad Sci U S A, 99, 6011-6016.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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