PDBsum entry 1i6j

Tunnel analysis for: 1i6j calculated with

MOLE 2.0

PDB id

1i6j

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

1.43

15.1

-0.65

0.40

14.8

67

4

1

1

1

2

2

0

2

1.47

1.68

16.0

-1.13

-0.36

2.8

69

0

0

2

1

1

1

0

DC 16 C

3

1.36

3.03

16.1

-0.06

0.63

16.1

67

4

1

0

3

3

1

0

4

1.37

3.12

16.2

0.29

0.54

8.5

66

2

0

1

4

3

1

0

5

1.50

1.68

16.8

-1.32

0.12

14.6

69

4

1

2

1

2

2

0

6

1.37

1.43

22.8

-1.85

-0.04

20.4

66

4

1

1

0

2

2

0

7

1.47

1.68

24.5

-2.31

-0.24

18.6

67

4

1

2

0

2

2

0

8

1.35

2.89

25.3

-0.54

0.39

16.4

66

4

1

1

3

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.