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PDBsum entry 1hys

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1hys calculated with MOLE 2.0 PDB id
1hys
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.62 3.62 43.6 -0.73 -0.80 7.9 80 1 1 0 0 0 0 0  U 854 E C 855 E A 856 E G 857 E C 858 E C 859 E A
860 E C 861 E U 862 E U 863 E U 864 E DT 887 F DA
890 F DA 891 F DA 892 F DT 894 F DG 895 F DG 896
F DG 899 F
2 1.83 1.99 47.9 -0.72 -0.48 10.9 75 1 2 0 1 2 1 0  U 854 E C 855 E A 856 E G 857 E C 858 E C 859 E D
A 890 F DA 891 F DA 892 F DT 894 F DG 895 F DG
896 F DG 899 F
3 1.28 3.25 51.7 -1.16 -0.52 15.8 79 3 4 0 2 2 2 0  C 859 E A 860 E C 861 E U 863 E U 864 E DT 887 F
DA 890 F
4 1.23 2.29 61.2 -1.09 -0.32 19.9 73 4 4 4 8 0 0 0  U 863 E U 864 E DT 887 F
5 1.17 1.33 72.9 -1.09 -0.16 23.0 76 7 6 2 6 3 2 0  
6 1.24 1.44 93.9 -1.56 -0.27 25.7 76 10 6 2 6 3 3 0  
7 3.34 3.65 97.7 -1.64 -0.61 17.6 81 8 4 3 2 1 1 0  U 854 E C 855 E A 856 E G 857 E C 858 E A 867 E A
868 E A 869 E A 870 E A 872 E DT 879 F DT 880 F
DT 881 F DT 882 F DA 890 F DA 891 F DA 892 F DT
894 F DG 895 F DG 896 F DG 899 F
8 3.88 3.88 102.9 -1.71 -0.62 18.6 83 9 5 4 3 1 1 0  C 859 E A 860 E C 861 E U 862 E U 863 E U 864 E A
867 E A 868 E A 869 E A 870 E A 872 E DT 879 F DT
880 F DT 881 F DT 882 F DT 887 F DA 890 F DA 891
F DA 892 F
9 1.34 3.04 103.5 -1.53 -0.47 17.5 79 8 6 3 3 3 3 0  C 859 E A 867 E A 868 E A 869 E A 870 E A 872 E
DT 879 F DT 880 F DT 881 F DT 882 F DA 890 F
10 1.20 1.33 158.4 -0.98 -0.17 19.3 74 7 4 6 10 1 3 0  
11 1.18 1.33 172.8 -1.61 -0.38 23.1 77 8 6 4 6 1 3 0  U 863 E U 864 E DT 887 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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