spacer
spacer

PDBsum entry 1hxm

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1hxm calculated with MOLE 2.0 PDB id
1hxm
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.07 5.65 25.4 -2.49 -0.58 30.8 87 3 5 2 1 0 1 0  
2 1.78 1.94 40.7 -2.92 -0.72 32.4 82 6 7 5 0 0 2 0  
3 1.76 1.94 45.8 -2.99 -0.75 32.7 82 7 7 4 0 0 2 0  
4 3.14 4.03 53.6 -1.90 -0.38 21.5 86 6 4 6 2 0 2 0  
5 3.18 5.28 54.1 -2.00 -0.52 18.8 87 7 3 5 1 0 2 0  
6 2.46 3.12 62.2 -1.93 -0.59 18.3 86 7 5 7 2 0 2 0  
7 2.49 2.79 62.4 -1.82 -0.62 20.6 90 4 8 9 5 0 1 0  
8 1.94 2.54 64.1 -1.64 -0.36 19.7 83 8 2 4 3 1 4 0  
9 2.36 2.53 67.6 -1.77 -0.50 21.2 88 5 8 4 5 0 2 0  
10 2.66 3.49 68.2 -1.76 -0.60 17.6 91 6 5 8 4 0 1 0  
11 2.13 3.64 72.0 -2.39 -0.57 27.6 81 11 6 5 2 0 3 0  
12 2.11 3.61 73.2 -1.53 -0.24 23.8 81 9 5 4 6 0 3 0  
13 2.46 3.09 80.9 -1.82 -0.53 21.6 87 7 10 8 6 0 2 0  
14 2.51 4.02 83.4 -2.06 -0.61 21.6 83 7 6 6 4 0 1 0  
15 2.34 2.53 88.6 -1.82 -0.54 17.7 88 7 5 7 3 0 3 0  
16 2.46 3.12 88.4 -2.31 -0.47 26.9 83 11 7 7 3 1 2 0  
17 2.46 3.22 92.2 -2.27 -0.66 23.6 86 7 10 7 5 0 2 0  
18 2.36 3.72 92.8 -2.15 -0.49 27.6 84 11 10 6 5 0 4 0  
19 2.62 2.70 99.6 -1.71 -0.46 21.6 90 12 6 12 5 0 2 0  
20 1.98 2.62 103.2 -1.96 -0.48 19.8 89 13 3 7 4 0 2 0  
21 3.06 3.29 105.7 -2.04 -0.55 21.4 85 11 9 7 4 0 4 0  
22 2.46 3.25 105.7 -2.18 -0.53 23.6 84 14 8 10 4 1 3 0  
23 2.43 3.08 105.7 -2.09 -0.39 26.9 86 13 7 9 5 1 2 0  
24 2.48 3.61 106.2 -1.64 -0.30 22.2 84 12 7 9 8 1 3 0  
25 2.42 3.04 120.6 -2.48 -0.68 24.2 83 10 9 9 3 0 2 0  
26 2.63 3.44 127.0 -2.12 -0.58 20.9 85 15 7 9 3 0 4 0  
27 2.56 3.96 130.1 -2.17 -0.67 23.0 87 12 10 12 5 0 2 0  
28 2.49 3.93 132.1 -1.69 -0.42 21.9 83 11 9 8 7 0 4 0  
29 2.49 3.94 135.4 -2.27 -0.66 24.1 82 14 10 9 3 0 4 0  
30 2.44 3.21 163.6 -1.88 -0.45 21.0 84 9 12 9 8 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer