PDBsum entry 1ht5

Pore analysis for: 1ht5 calculated with

MOLE 2.0

PDB id

1ht5

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.19

25.3

-0.76

-0.31

9.1

74

2

1

4

1

3

1

1

2

1.35

2.13

34.4

-0.19

-0.14

9.3

80

2

2

6

5

3

0

0

NAG 1671 A NAG 2672 A NAG 2671 B

3

1.34

1.58

35.4

0.60

0.18

5.6

83

3

0

4

10

3

0

0

FL2 2701 B BOG 2802 B

4

1.80

1.88

36.1

-1.68

-0.43

16.6

72

6

2

4

1

1

3

2

5

1.28

1.28

37.2

0.74

0.21

6.7

84

4

0

3

9

2

1

0

FL2 1701 A BOG 1802 A

6

1.90

2.16

37.3

-1.48

-0.33

12.4

73

4

2

6

2

2

3

2

7

1.47

1.60

40.9

-2.40

-0.62

7.2

71

4

0

6

0

4

2

0

8

2.00

2.23

41.4

-1.53

-0.40

13.3

72

5

2

5

1

2

3

2

9

1.17

1.18

46.4

-0.53

-0.03

8.8

72

4

1

6

3

5

2

0

10

1.28

1.28

63.5

0.73

0.10

3.6

82

3

0

8

10

8

1

0

NAG 1671 A FL2 2701 B

11

1.89

1.86

93.1

-1.65

-0.56

16.0

85

8

2

5

0

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.