PDBsum entry 1ht5

Tunnel analysis for: 1ht5 calculated with

MOLE 2.0

PDB id

1ht5

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.21

30.7

1.13

0.15

3.9

73

1

0

2

6

3

1

0

NAG 2671 B

2

1.34

1.57

35.6

0.69

0.23

4.1

79

2

0

4

7

6

1

0

FL2 2701 B

3

1.70

2.95

37.6

1.70

0.70

5.0

76

3

0

2

13

6

1

0

FL2 2701 B BOG 2802 B

4

1.70

2.95

42.4

2.10

0.84

2.2

71

1

0

2

15

7

0

0

FL2 2701 B BOG 2802 B

5

1.25

1.25

74.1

0.30

-0.04

5.7

80

4

0

8

11

10

1

0

FL2 1701 A

6

1.27

1.31

21.0

-0.95

-0.20

18.5

83

2

2

2

5

1

0

0

HEM 601 B

7

1.27

1.31

25.3

-1.56

-0.39

22.0

79

2

2

2

4

1

1

0

HEM 601 B

8

1.44

3.29

15.4

-1.60

-0.27

19.2

89

1

2

1

3

1

0

0

HEM 601 A

9

1.47

3.38

18.5

-2.14

-0.50

20.4

83

1

2

1

1

1

1

0

HEM 601 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.