spacer
spacer

PDBsum entry 1hr9

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1hr9 calculated with MOLE 2.0 PDB id
1hr9
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
25 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.64 3.98 32.4 0.21 0.01 14.4 85 2 3 4 6 0 0 0  
2 1.44 1.63 34.3 0.14 0.02 12.4 76 2 2 3 7 3 1 0  
3 1.29 1.61 34.6 -1.35 -0.78 10.1 87 3 2 5 2 0 0 0  
4 1.26 1.61 52.8 -1.75 -0.53 18.2 85 4 5 6 4 2 0 0  
5 1.85 1.89 54.4 -1.05 -0.11 9.4 73 3 3 3 3 3 6 0  EPE 489 E
6 1.91 1.90 61.5 -1.57 -0.45 23.0 79 3 6 4 4 2 1 0  
7 1.15 1.36 64.7 -0.53 0.00 12.8 83 3 4 3 5 1 2 0  
8 1.64 3.20 65.3 -1.09 -0.11 20.6 80 5 5 2 5 1 1 0  
9 1.35 1.69 66.1 -1.40 -0.53 19.0 89 5 5 7 5 0 0 0  
10 1.48 1.51 71.4 -1.68 -0.44 18.6 88 4 2 6 9 2 0 0  
11 1.68 4.03 80.9 -1.21 -0.35 12.1 82 3 9 9 5 2 3 0  
12 1.46 1.46 91.3 -2.08 -0.57 14.8 81 5 8 8 2 3 2 0  
13 1.45 1.41 96.5 -2.41 -0.54 19.9 85 11 5 11 1 3 1 0  
14 1.48 1.48 96.9 -1.30 -0.36 13.5 83 5 6 7 6 4 0 0  
15 1.91 1.91 108.3 -0.66 -0.22 18.9 86 9 9 6 10 1 1 0  
16 1.83 2.31 111.7 -1.42 -0.51 16.5 83 4 8 10 6 2 2 0  
17 1.54 1.84 117.5 -1.69 -0.42 22.1 83 9 8 8 9 4 0 0  
18 1.51 2.26 133.8 -1.69 -0.44 20.4 86 10 7 11 11 4 0 0  
19 1.49 1.50 169.8 -1.57 -0.39 18.9 80 7 11 11 13 6 4 0  
20 1.50 1.48 171.2 -1.65 -0.51 20.8 81 10 12 11 12 4 2 0  
21 1.68 2.99 231.6 -1.22 -0.29 22.4 86 19 16 14 24 4 2 0  
22 1.60 2.94 236.8 -0.95 -0.19 20.5 86 18 16 15 27 5 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer