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PDBsum entry 1hr0
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1hr0 calculated with MOLE 2.0 PDB id
1hr0
Pores calculated on whole structure Pores calculated excluding ligands
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31 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.88 2.20 28.0 -1.37 -0.72 14.9 88 3 0 1 0 0 0 0  A 1434 A G 1435 A U 1436 A C 1437 A G 1438 A C
1439 A C 1440 A G 1441 A G 1442 A G 1443 A G 1453
A G 1454 A A 1460 A G 1461 A G 1462 A C 1463 A
2 1.20 1.39 77.6 -1.81 -0.60 21.2 78 7 1 2 2 1 1 0  U 580 A G 581 A A 583 A G 584 A G 587 A U 646 A C
647 A A 648 A G 649 A G 650 A C 656 A G 657 A G
658 A U 659 A G 660 A G 661 A G 742 A U 743 A G
752 A A 753 A C 754 A G 755 A C 756 A U 757 A G
758 A
3 1.21 1.41 83.0 -1.28 -0.58 14.0 73 4 2 1 1 2 1 0  G 654 A A 655 A C 656 A G 657 A G 658 A U 659 A G
660 A G 661 A C 744 A C 745 A A 746 A C 747 A C
748 A G 825 A C 826 A U 827 A A 828 A G 829 A G
851 A G 852 A U 870 A
4 1.20 1.38 89.6 -1.14 -0.68 11.8 70 5 0 1 0 0 2 0  U 659 A G 660 A G 661 A G 662 A A 663 A G 664 A A
665 A G 667 A G 668 A U 669 A G 670 A G 671 A U
672 A G 673 A G 674 A A 675 A G 709 A G 710 A G
711 A A 712 A G 713 A G 714 A A 715 A A 716 A A
733 A G 734 A C 735 A C 736 A A 737 A C 739 A U
740 A C 806 A MG 1548 A
5 2.83 3.05 100.3 -0.70 -0.64 8.7 81 3 0 2 2 0 0 0  C 58 A G 61 A U 62 A C 63 A G 64 A G 69 A G 70 A
C 73 A C 74 A G 75 A C 76 A A 88 A C 89 A U 90 A
C 91 A C 92 A G 93 A U 95 A G 96 A G 97 A U 98 A
C 99 A A 101 A G 102 A A 151 A A 152 A C 163 A U
164 A C 165 A C 385 A C 386 A G 1435 A G 1461 A
6 2.00 3.20 105.0 -0.59 -0.71 7.3 72 3 2 0 1 0 2 0  G 858 A A 859 A A 860 A C 866 A G 867 A G 887 A G
888 A G 890 A G 916 A G 917 A A 918 A A 919 A U
920 A C 1076 A G 1077 A G 1082 A U 1391 A G 1392
A U 1393 A A 1394 A C 1404 A G 1405 A U 1406 A C
1407 A A 1408 A G 1487 A G 1488 A C 1509 A U 1510
A A 1519 A G 1520 A G 1529 A G 1530 A
7 2.16 2.27 116.2 -1.41 -0.66 15.9 73 6 3 0 1 3 1 0  U 580 A G 581 A A 583 A G 584 A G 587 A U 646 A C
647 A A 648 A G 649 A G 650 A G 654 A A 655 A C
656 A U 743 A C 744 A C 745 A G 752 A A 753 A C
754 A G 755 A C 756 A U 757 A G 758 A G 823 A C
824 A G 825 A C 826 A U 827 A A 828 A G 829 A G
851 A G 852 A U 870 A
8 3.09 3.09 125.7 -0.39 -0.72 4.0 60 0 1 0 1 1 0 0  G 117 A U 118 A A 119 A A 120 A G 122 A C 233 A U
252 A G 258 A G 259 A G 260 A G 265 A C 267 A C
268 A C 269 A U 287 A C 314 A G 319 A C 320 A A
321 A C 328 A C 1407 A A 1408 A C 1409 A G 1410 A
U 1414 A G 1415 A G 1423 A C 1424 A U 1425 A C
1426 A U 1436 A C 1437 A G 1438 A C 1439 A C 1440
A G 1441 A G 1442 A G 1443 A G 1453 A G 1454 A C
1478 A C 1479 A G 1480 A U 1481 A G 1482 A A 1483
A U 1485 A G 1486 A G 1487 A
9 2.58 2.58 126.1 -0.37 -0.70 4.2 60 0 1 0 1 1 0 0  A 50 A A 51 A G 52 A A 116 A G 117 A U 164 A C
165 A U 287 A C 314 A A 315 A G 316 A G 317 A G
318 A G 319 A C 320 A C 328 A A 329 A G 333 A C
334 A C 335 A G 348 A A 349 A G 350 A G 351 A C
1407 A A 1408 A C 1409 A G 1410 A U 1414 A G 1415
A G 1423 A C 1424 A U 1425 A G 1435 A G 1461 A C
1479 A G 1480 A U 1481 A G 1482 A A 1483 A U 1485
A G 1486 A G 1487 A
10 1.42 1.48 141.7 -1.23 -0.64 14.7 74 9 2 0 1 0 3 0  G 858 A A 859 A A 860 A C 866 A G 867 A U 920 A U
921 A G 922 A A 923 A C 924 A G 925 A G 926 A G
928 A G 966 A C 1076 A G 1077 A G 1082 A A 1229 A
G 1338 A A 1339 A A 1340 A C 1384 A G 1385 A G
1386 A G 1387 A C 1388 A C 1389 A U 1390 A U 1391
A C 1400 A
11 2.04 3.10 151.0 -0.77 -0.67 8.3 76 6 2 1 2 1 3 0  U 14 A G 15 A A 16 A U 421 A U 512 A C 513 A C
514 A G 527 A C 528 A A 532 A U 534 A G 858 A A
859 A A 860 A C 866 A G 867 A G 887 A A 915 A G
916 A G 917 A A 918 A A 919 A U 920 A C 1076 A G
1077 A G 1082 A G 1207 A C 1208 A U 1391 A G 1392
A U 1393 A A 1394 A A 1396 A C 1397 A C 1403 A C
1404 A C 1490 A G 1491 A A 1492 A C 1509 A U 1510
A G 1529 A G 1530 A MG 1560 A
12 1.50 1.47 154.3 -1.11 -0.54 13.6 73 10 2 0 3 2 2 0  G 515 A U 516 A G 517 A U 531 A G 858 A A 859 A A
860 A C 866 A G 867 A U 920 A U 921 A G 922 A A
923 A C 924 A G 925 A G 954 A A 964 A A 965 A G
966 A C 1076 A G 1077 A G 1082 A C 1195 A U 1196
A G 1385 A G 1386 A G 1387 A C 1388 A C 1389 A U
1390 A U 1391 A C 1399 A C 1400 A
13 1.27 1.43 162.6 -0.70 -0.77 6.8 78 4 0 2 0 0 1 0  U 659 A G 660 A G 661 A G 662 A A 663 A G 664 A A
665 A G 667 A G 668 A U 669 A G 670 A A 716 A C
717 A U 723 A G 724 A C 732 A A 733 A G 734 A C
735 A C 736 A A 737 A C 739 A U 740 A C 806 A G
818 A A 819 A G 855 A C 856 A C 857 A C 866 A G
867 A G 887 A G 888 A G 890 A G 916 A G 917 A A
918 A A 919 A U 1393 A A 1394 A C 1404 A G 1405 A
U 1406 A C 1407 A A 1408 A G 1487 A G 1488 A C
1509 A U 1510 A A 1519 A G 1520 A G 1525 A G 1526
A C 1527 A U 1528 A G 1529 A G 1530 A MG 1548 A
14 1.29 1.43 176.2 -0.76 -0.76 7.5 77 5 0 2 0 0 1 0  U 659 A G 660 A G 661 A G 662 A A 663 A G 664 A A
665 A G 667 A G 668 A U 669 A G 670 A G 693 A A
716 A C 717 A U 723 A C 732 A A 733 A G 734 A C
735 A C 736 A A 737 A C 739 A U 740 A C 806 A G
926 A G 928 A C 936 A A 937 A A 938 A C 940 A G
941 A G 966 A U 1341 A C 1342 A C 1382 A C 1383 A
C 1384 A G 1385 A C 1400 A A 1503 A A 1507 A G
1525 A G 1526 A C 1527 A U 1528 A G 1530 A A 1531
A A 1534 A MG 1548 A C 1 X U 2 X U 3 X U 4 X C 5 X
15 2.66 2.83 179.8 -0.83 -0.61 9.9 76 5 3 1 2 2 2 0  A 119 A C 237 A G 238 A U 239 A C 240 A C 241 A G
286 A U 287 A C 290 A C 291 A G 292 A G 301 A G
302 A U 304 A G 305 A G 593 A G 594 A C 596 A G
597 A A 632 A G 633 A C 634 A G 635 A U 646 A C
647 A A 648 A G 649 A G 650 A G 752 A A 908 A A
909 A C 1407 A A 1408 A C 1409 A G 1410 A U 1414
A G 1415 A C 1479 A G 1480 A U 1481 A G 1482 A A
1483 A U 1485 A G 1486 A G 1487 A
16 2.10 2.09 186.1 -0.95 -0.77 10.2 80 6 1 1 0 1 0 0  U 580 A G 581 A A 583 A G 584 A G 587 A U 646 A C
647 A A 648 A G 649 A G 650 A G 693 A U 723 A G
724 A G 727 A A 728 A A 729 A G 731 A U 743 A C
744 A G 752 A A 753 A C 754 A G 755 A C 756 A U
757 A G 758 A G 818 A C 822 A G 823 A G 853 A G
854 A G 855 A G 926 A G 928 A C 936 A A 937 A A
938 A C 940 A G 941 A G 966 A U 1341 A C 1342 A C
1382 A C 1383 A C 1384 A G 1385 A C 1400 A A 1503
A A 1507 A C 1527 A U 1528 A G 1530 A A 1531 A A
1534 A C 1 X U 2 X U 3 X U 4 X C 5 X
17 1.31 1.49 193.0 -0.78 -0.75 8.0 72 8 0 1 0 0 1 0  A 120 A C 121 A G 122 A U 164 A C 165 A C 233 A U
239 A C 240 A C 241 A C 242 A A 243 A U 244 A U
252 A G 265 A C 267 A C 268 A C 277 A G 278 A G
281 A A 282 A C 283 A C 314 A A 315 A G 316 A G
318 A G 319 A C 320 A C 328 A A 329 A G 333 A C
334 A C 335 A G 348 A A 349 A G 350 A G 351 A U
659 A G 660 A G 661 A G 662 A A 663 A G 664 A A
665 A G 667 A G 668 A U 669 A G 670 A C 732 A A
733 A G 734 A C 735 A C 736 A A 737 A C 739 A U
740 A A 759 A G 760 A G 761 A C 762 A G 763 A C
764 A G 765 A A 766 A A 767 A C 806 A A 807 A C
808 A G 809 A C 810 A C 811 A C 812 A C 882 A G
895 A C 896 A C 897 A G 903 A C 904 A U 905 A G
1435 A G 1461 A MG 1548 A
18 2.33 2.33 193.8 -0.39 -0.58 7.8 80 4 2 1 4 0 2 0  C 123 A G 124 A U 125 A G 126 A G 127 A G 128 A U
129 A G 129 A i:A U 164 A C 165 A G 190 A i:G U
190 A i:D C 190 A i:C U 190 A i:E G 227 A A 228 A
U 229 A G 230 A G 231 A G 232 A C 233 A C 234 A C
312 A A 313 A C 314 A A 315 A G 316 A G 318 A G
319 A C 320 A C 328 A A 329 A G 333 A C 334 A C
335 A G 348 A A 349 A G 350 A G 351 A G 593 A G
594 A G 595 A C 596 A G 637 A C 647 A A 648 A G
649 A G 650 A G 752 A G 1435 A
19 2.40 2.40 196.1 -0.64 -0.59 9.9 81 5 5 1 4 0 2 0  C 123 A G 124 A U 125 A G 126 A G 127 A G 128 A G
129 A i:A U 129 A G 190 A i:G U 190 A i:D U 190 A
i:E G 227 A A 228 A U 229 A G 230 A G 231 A G 232
A C 233 A C 234 A G 258 A G 259 A G 260 A A 263 A
G 265 A C 267 A C 268 A C 269 A C 312 A A 313 A A
321 A C 328 A G 593 A G 594 A G 595 A C 596 A G
637 A C 647 A A 648 A G 649 A G 650 A G 752 A U
1436 A C 1437 A G 1438 A C 1439 A C 1440 A G 1441
A G 1442 A G 1443 A G 1453 A G 1454 A
20 2.49 2.49 195.7 -0.59 -0.77 5.6 71 5 0 0 0 0 1 0  A 120 A C 121 A G 122 A U 164 A C 165 A C 233 A U
239 A C 240 A C 241 A C 242 A A 243 A U 244 A U
252 A G 265 A C 267 A C 268 A C 277 A G 278 A G
281 A A 282 A C 283 A C 314 A A 315 A G 316 A G
318 A G 319 A C 320 A C 328 A A 329 A G 333 A C
334 A C 335 A G 348 A A 349 A G 350 A G 351 A G
668 A U 669 A G 670 A G 671 A U 672 A G 673 A G
674 A A 675 A G 709 A G 710 A G 711 A A 712 A G
713 A G 714 A A 715 A A 716 A C 732 A A 733 A A
759 A G 760 A G 761 A C 762 A G 763 A C 764 A G
765 A A 766 A A 767 A C 806 A A 807 A C 808 A G
809 A C 810 A C 811 A C 812 A C 882 A G 895 A C
896 A C 897 A G 903 A C 904 A U 905 A G 1435 A G
1461 A
21 1.65 2.59 197.8 -1.22 -0.67 14.8 72 14 7 1 2 2 5 0  U 5 A A 120 A C 121 A G 122 A U 164 A C 165 A C
233 A G 238 A U 239 A C 240 A C 241 A U 252 A G
265 A C 267 A C 268 A C 277 A G 278 A G 281 A A
282 A C 283 A G 292 A G 293 A G 297 A G 299 A A
300 A G 301 A G 302 A C 314 A A 315 A G 316 A G
318 A G 319 A C 320 A C 328 A A 329 A G 333 A C
334 A C 335 A G 348 A A 349 A G 350 A G 351 A U
565 A G 566 A G 610 A A 611 A G 630 A G 631 A A
632 A A 860 A G 861 A C 862 A G 1077 A U 1078 A G
1435 A G 1461 A
22 2.17 2.21 209.0 -0.93 -0.73 9.5 78 8 1 1 1 2 1 0  U 14 A G 15 A A 16 A U 421 A U 512 A C 513 A C
514 A G 527 A C 528 A A 532 A U 534 A U 580 A G
581 A A 583 A G 584 A G 587 A U 646 A C 647 A A
648 A G 649 A G 650 A U 723 A G 724 A G 727 A A
728 A A 729 A G 731 A U 743 A C 744 A G 752 A A
753 A C 754 A G 755 A C 756 A U 757 A G 758 A G
818 A A 819 A C 822 A G 823 A G 853 A G 854 A G
855 A C 856 A C 857 A C 866 A G 867 A G 887 A A
915 A G 916 A G 917 A A 918 A A 919 A G 1207 A C
1208 A U 1393 A A 1394 A A 1396 A C 1397 A C 1403
A C 1404 A C 1490 A G 1491 A A 1492 A C 1509 A U
1510 A U 1528 A G 1529 A G 1530 A MG 1560 A
23 2.91 2.91 210.9 -0.70 -0.74 6.7 76 4 1 1 2 2 1 0  U 14 A G 15 A A 16 A G 117 A U 118 A A 119 A A
120 A G 122 A C 233 A C 242 A U 244 A U 252 A G
258 A G 259 A G 260 A G 265 A C 267 A C 268 A C
269 A G 286 A U 287 A C 314 A G 319 A C 320 A A
321 A C 328 A U 421 A U 512 A C 513 A C 514 A G
527 A C 528 A A 532 A U 534 A A 572 A A 573 A A
574 A U 884 A G 885 A G 886 A G 887 A G 888 A A
889 A G 890 A A 907 A A 908 A A 915 A G 916 A G
1207 A C 1208 A A 1396 A C 1397 A C 1403 A C 1404
A G 1423 A C 1424 A U 1425 A C 1426 A U 1436 A C
1437 A G 1438 A C 1439 A C 1440 A G 1441 A G 1442
A G 1443 A G 1453 A G 1454 A C 1478 A C 1479 A C
1490 A G 1491 A A 1492 A U 1510 A MG 1560 A
24 1.76 1.73 215.6 -0.83 -0.70 9.9 82 7 1 0 4 1 0 0  G 7 A A 8 A G 9 A A 10 A G 11 A A 26 A G 27 A G
29 A U 30 A G 44 A U 45 A C 58 A A 59 A U 62 A C
63 A G 64 A G 69 A G 70 A C 73 A C 74 A G 75 A C
76 A A 88 A C 89 A U 90 A C 91 A C 92 A G 93 A U
95 A G 96 A G 97 A U 98 A C 99 A C 295 A U 296 A
G 297 A A 298 A G 306 A C 307 A C 308 A C 355 A A
356 A C 369 A C 370 A G 371 A C 372 A C 385 A C
386 A U 387 A G 388 A C 390 A G 391 A G 392 A A
393 A C 400 A U 421 A G 505 A G 506 A C 507 A C
508 A U 512 A C 513 A C 514 A A 532 A U 534 A G
557 A G 558 A C 623 A C 624 A G 1207 A C 1208 A
25 2.63 2.63 211.4 -0.68 -0.73 6.6 76 4 1 1 2 2 1 0  U 14 A G 15 A A 16 A A 50 A A 51 A G 52 A A 116 A
G 117 A U 164 A C 165 A C 242 A U 244 A G 286 A U
287 A C 314 A A 315 A G 316 A G 317 A G 318 A G
319 A C 320 A C 328 A A 329 A G 333 A C 334 A C
335 A G 348 A A 349 A G 350 A G 351 A U 421 A U
512 A C 513 A C 514 A G 527 A C 528 A A 532 A U
534 A A 572 A A 573 A A 574 A U 884 A G 885 A G
886 A G 887 A G 888 A A 889 A G 890 A A 907 A A
908 A A 915 A G 916 A G 1207 A C 1208 A A 1396 A
C 1397 A C 1403 A C 1404 A G 1423 A C 1424 A U
1425 A G 1435 A G 1461 A C 1478 A C 1479 A C 1490
A G 1491 A A 1492 A U 1510 A MG 1560 A
26 1.57 2.40 228.4 -1.22 -0.70 14.3 73 11 7 2 1 2 4 0  U 5 A G 6 A G 29 A U 30 A G 44 A U 45 A C 58 A A
59 A U 62 A C 63 A G 64 A G 69 A G 70 A C 73 A C
74 A G 75 A C 76 A A 88 A C 89 A U 90 A C 91 A C
92 A G 93 A U 95 A G 96 A G 97 A U 98 A C 99 A C
295 A U 296 A G 297 A G 299 A A 300 A G 306 A C
307 A C 308 A C 355 A A 356 A C 369 A C 370 A G
371 A C 372 A C 385 A C 386 A U 387 A G 388 A C
390 A G 391 A G 392 A A 393 A C 400 A U 565 A G
566 A A 611 A C 612 A C 623 A C 624 A G 630 A A
860 A G 861 A C 862 A G 1077 A U 1078 A
27 2.14 2.14 249.3 -0.62 -0.62 9.3 81 5 5 1 4 0 2 0  G 64 A U 65 A G 69 A G 70 A C 73 A C 74 A G 75 A
C 76 A A 88 A C 89 A U 90 A C 91 A C 92 A G 93 A
U 95 A G 96 A G 129 A i:A U 129 A C 132 A U 133 A
A 134 A C 135 A C 136 A C 137 A G 138 A G 139 A A
141 A G 190 A i:G U 190 A i:D U 190 A i:E G 190 A
i:H C 201 A U 202 A C 218 A C 219 A C 221 A U 222
A U 223 A C 224 A C 225 A G 226 A G 227 A C 381 A
A 382 A C 455 A C 456 A C 461 A G 462 A G 593 A G
594 A G 595 A C 596 A G 637 A C 647 A A 648 A G
649 A G 650 A G 752 A
28 1.21 1.38 255.7 -1.01 -0.74 11.4 72 8 4 1 0 1 1 0  U 5 A G 6 A G 29 A U 30 A G 44 A U 45 A C 58 A A
59 A U 62 A C 63 A G 64 A G 69 A G 70 A C 73 A C
74 A G 75 A C 76 A A 88 A C 89 A U 90 A C 91 A C
92 A G 93 A U 95 A G 96 A G 97 A U 98 A C 99 A C
295 A U 296 A G 297 A G 299 A A 300 A G 306 A C
307 A C 308 A C 355 A A 356 A C 369 A C 370 A G
371 A C 372 A C 385 A C 386 A U 387 A G 388 A C
390 A G 391 A G 392 A A 393 A C 400 A U 565 A G
566 A G 568 A C 569 A A 611 A C 612 A C 623 A C
624 A G 630 A A 655 A C 656 A G 657 A G 658 A U
659 A G 660 A G 661 A C 744 A C 745 A G 821 A C
822 A G 823 A C 824 A G 825 A G 852 A G 853 A U
871 A A 872 A A 873 A G 874 A C 875 A G 876 A C
877 A
29 1.40 1.47 265.5 -1.14 -0.52 13.1 80 10 4 8 8 4 2 0  U 659 A G 660 A G 661 A G 662 A A 663 A G 664 A A
665 A G 667 A G 668 A U 669 A G 670 A G 693 A A
716 A C 717 A U 723 A C 732 A A 733 A G 734 A C
735 A C 736 A A 737 A C 739 A U 740 A C 806 A G
1174 A G 1175 A G 1181 A U 1247 A A 1248 A A 1289
A G 1290 A U 1372 A G 1373 A A 1374 A C 1378 A G
1379 A U 1380 A U 1381 A G 1525 A G 1526 A C 1527
A U 1528 A G 1530 A A 1531 A A 1534 A MG 1548 A
30 1.75 1.79 275.3 -1.19 -0.54 13.8 80 11 5 7 8 5 1 0  U 580 A G 581 A A 583 A G 584 A G 587 A U 646 A C
647 A A 648 A G 649 A G 650 A G 693 A U 723 A G
724 A G 727 A A 728 A A 729 A G 731 A U 743 A C
744 A G 752 A A 753 A C 754 A G 755 A C 756 A U
757 A G 758 A G 818 A C 822 A G 823 A G 853 A G
854 A G 855 A G 1174 A G 1175 A G 1181 A U 1247 A
A 1248 A A 1289 A G 1290 A U 1372 A G 1373 A A
1374 A C 1378 A G 1379 A U 1380 A U 1381 A C 1527
A U 1528 A G 1530 A A 1531 A A 1534 A
31 1.45 1.74 57.9 -0.09 -0.14 12.6 78 2 4 1 7 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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