PDBsum entry 1hqu

Pore analysis for: 1hqu calculated with

MOLE 2.0

PDB id

1hqu

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.57

1.93

30.3

-0.46

-0.15

3.9

78

0

1

5

3

2

2

0

2

1.17

2.45

33.4

2.21

0.70

4.2

83

2

0

3

11

2

0

0

3

1.27

1.53

40.1

0.88

0.26

3.5

75

2

0

3

9

2

2

0

4

1.86

2.39

44.8

0.02

0.10

11.7

73

3

2

2

5

5

3

0

HBY 561 A

5

1.87

3.87

45.5

-1.62

-0.10

22.5

79

4

4

0

2

2

1

0

6

1.57

2.13

65.1

-1.49

-0.48

15.6

86

5

3

7

3

3

0

0

7

1.66

1.90

71.9

-0.46

-0.01

11.1

75

3

4

5

9

6

2

0

HBY 561 A

8

1.57

2.05

80.6

-1.04

-0.26

11.9

82

6

1

6

4

4

1

0

9

1.27

1.35

84.0

-0.55

0.03

13.1

72

5

3

4

8

5

1

0

10

1.25

1.40

101.3

-0.06

-0.07

8.5

83

7

1

9

13

2

2

0

11

1.55

2.38

164.1

-1.48

-0.31

25.3

74

14

10

3

5

9

1

0

HBY 561 A

12

1.55

2.76

183.5

-1.84

-0.22

23.2

74

15

13

6

5

9

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.