spacer
spacer

PDBsum entry 1hjb

Go to PDB code: 
Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1hjb calculated with MOLE 2.0 PDB id
1hjb
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.97 1.97 93.3 -1.45 -0.58 17.0 81 4 1 1 1 1 0 0  DA 12 I DA 13 I DC 14 I DT 15 I DC 16 I DA 9 J DG
12 J DA 13 J DT 17 J DG 18 J DG 19 J
2 1.41 1.41 114.0 -1.33 -0.58 16.4 81 5 3 1 2 0 2 1  DG 18 G DT 19 G DG 3 H DC 4 H DA 5 H DC 8 H DA 9
H DC 10 H DA 2 I DA 3 I DA 22 J DT 23 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer