PDBsum entry 1hdu

Pore analysis for: 1hdu calculated with

MOLE 2.0

PDB id

1hdu

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

4.01

5.07

30.8

-1.36

-0.49

11.2

91

3

1

6

2

1

0

0

2

1.94

3.44

33.2

-1.83

-0.09

25.4

70

5

5

2

3

7

1

0

3

1.96

3.44

33.4

-0.80

0.17

19.6

70

5

3

1

4

4

1

0

4

2.11

2.99

57.0

-0.89

-0.14

12.4

83

4

3

5

6

3

1

0

5

2.03

2.27

59.6

-0.85

-0.15

12.4

79

5

3

3

5

3

1

0

6

2.88

3.02

59.4

-1.48

-0.25

14.0

78

4

0

6

3

4

1

0

7

2.12

3.49

60.9

-1.08

-0.03

15.7

74

5

3

4

6

4

1

1

8

2.13

3.58

61.6

-1.32

-0.23

14.3

77

5

2

5

3

4

1

0

9

2.89

3.07

77.4

-1.14

-0.07

12.6

76

4

1

6

7

5

1

1

10

2.18

3.43

81.9

-1.20

-0.22

15.0

81

5

3

7

5

4

1

0

11

2.96

2.96

92.3

-1.83

-0.48

16.3

89

7

2

10

2

3

0

0

12

2.42

3.73

99.1

-1.39

-0.28

16.0

81

8

1

7

6

5

1

0

13

2.13

2.96

111.6

-1.91

-0.28

20.1

78

10

4

7

2

7

1

0

14

2.05

2.26

112.6

-1.49

-0.14

17.6

77

10

3

6

4

6

1

0

15

1.27

3.40

118.5

-1.19

-0.20

14.9

83

8

2

9

6

7

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.