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PDBsum entry 1hdi

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Cleft analysis for: 1hdi PDB id
1hdi
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 5852.25 3.87 65.88 3 11.47 2 14.65 1 16 14 18 23 10 21 1 AMP 417[A], 3PG 419[A] (34 atoms)
2 1510.31 0.00 67.46 1 11.56 1 10.86 2 5 3 6 12 1 2 0  
3 631.55 0.00 56.48 8 7.15 3 6.95 6 2 3 2 5 2 4 0  
4 699.89 0.00 62.24 6 6.30 6 6.01 8 1 2 5 5 1 4 1  
5 562.36 0.00 56.38 9 4.77 9 8.43 3 3 3 2 2 1 4 0  
6 583.88 0.00 63.73 5 5.60 7 6.45 7 8 4 1 2 0 1 0 3PG 419[A](1 atom)
7 346.78 0.00 53.92 10 5.27 8 7.43 4 0 1 3 3 0 1 0  
8 380.53 0.00 59.89 7 6.74 5 7.10 5 3 0 2 5 0 1 0  
9 273.38 0.00 64.43 4 7.14 4 5.69 9 1 0 1 8 0 2 0  
10 322.73 0.00 67.01 2 3.51 10 5.10 10 2 0 2 7 0 1 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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