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PDBsum entry 1h6u

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Cell adhesion PDB id
1h6u

 

 

 

 

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Contents
Protein chain
308 a.a. *
Waters ×403
* Residue conservation analysis
PDB id:
1h6u
Name: Cell adhesion
Title: Internalin h: crystal structure of fused n-terminal domains.
Structure: Internalin h. Chain: a. Fragment: lrr domain, residues 36-343. Engineered: yes
Source: Listeria monocytogenes. Organism_taxid: 1639. Strain: egd (serovar 1/2a). Expressed in: escherichia coli. Expression_system_taxid: 511693.
Biol. unit: Dimer (from PDB file)
Resolution:
1.80Å     R-factor:   0.170     R-free:   0.217
Authors: W.-D.Schubert,G.Gobel,M.Diepholz,A.Darji,D.Kloer,T.Hain, T.Chakraborty,J.Wehland,E.Domann,D.W.Heinz
Key ref:
W.D.Schubert et al. (2001). Internalins from the human pathogen Listeria monocytogenes combine three distinct folds into a contiguous internalin domain. J Mol Biol, 312, 783-794. PubMed id: 11575932 DOI: 10.1006/jmbi.2001.4989
Date:
25-Jun-01     Release date:   11-Oct-01    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q9ZEY1  (Q9ZEY1_LISMN) -  Class 1 internalin InlH from Listeria monocytogenes
Seq:
Struc:
 
Seq:
Struc:
548 a.a.
308 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 3 residue positions (black crosses)

 

 
DOI no: 10.1006/jmbi.2001.4989 J Mol Biol 312:783-794 (2001)
PubMed id: 11575932  
 
 
Internalins from the human pathogen Listeria monocytogenes combine three distinct folds into a contiguous internalin domain.
W.D.Schubert, G.Göbel, M.Diepholz, A.Darji, D.Kloer, T.Hain, T.Chakraborty, J.Wehland, E.Domann, D.W.Heinz.
 
  ABSTRACT  
 
Listeria monocytogenes is an opportunistic, food-borne human and animal pathogen. Host cell invasion requires the action of the internalins A (InlA) and B (InlB), which are members of a family of listerial cell-surface proteins. Common to these proteins are three distinctive N-terminal domains that have been shown to direct host cell-specific invasion for InlA and InlB. Here, we present the high-resolution crystal structures of these domains present in InlB and InlH, and show that they constitute a single "internalin domain". In this internalin domain, a central LRR region is flanked contiguously by a truncated EF-hand-like cap and an immunoglobulin (Ig)-like fold. The extended beta-sheet, resulting from the distinctive fusion of the LRR and the Ig-like folds, constitutes an adaptable concave interaction surface, which we propose is responsible for the specific recognition of the host cellular binding partners during infection.
 
  Selected figure(s)  
 
Figure 4.
Figure 4. Structure of a single LRR comprising 22 residues. b-Strand and 3[10]-helix are indicated in red and blue, respectively. Side-chain bonds of hydrophobic core residues are shown and labeled in yellow. Exposed residue bonds are shaded gray, while conserved and variable residue positions are labeled in red and black, respectively.[55]
Figure 8.
Figure 8. The continuous hydrophobic core of the internalin domain in InlH[36-343]. The sub-domain colors correspond to Figure 1. The molecular surface is cut away to reveal the interior of the molecule. Hydrophobic amino acid side-chain atoms in the core are shown in yellow. [57]
 
  The above figures are reprinted by permission from Elsevier: J Mol Biol (2001, 312, 783-794) copyright 2001.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20176794 N.Personnic, S.Bruck, M.A.Nahori, A.Toledo-Arana, G.Nikitas, M.Lecuit, O.Dussurget, P.Cossart, and H.Bierne (2010).
The stress-induced virulence protein InlH controls interleukin-6 production during murine listeriosis.
  Infect Immun, 78, 1979-1989.  
19452560 K.L.Hindle, J.Bella, and S.C.Lovell (2009).
Quantitative analysis and prediction of curvature in leucine-rich repeat proteins.
  Proteins, 77, 342-358.  
19014275 S.R.Milillo, and M.Wiedmann (2009).
Contributions of six lineage-specific internalin-like genes to invasion efficiency of Listeria monocytogenes.
  Foodborne Pathog Dis, 6, 57-70.  
19640851 T.Reinl, M.Nimtz, C.Hundertmark, T.Johl, G.Kéri, J.Wehland, H.Daub, and L.Jänsch (2009).
Quantitative phosphokinome analysis of the Met pathway activated by the invasin internalin B from Listeria monocytogenes.
  Mol Cell Proteomics, 8, 2778-2795.  
18331468 M.Kirchner, and D.E.Higgins (2008).
Inhibition of ROCK activity allows InlF-mediated invasion and increased virulence of Listeria monocytogenes.
  Mol Microbiol, 68, 749-767.  
18214954 Q.R.Fan, and W.A.Hendrickson (2008).
Comparative structural analysis of the binding domain of follicle stimulating hormone receptor.
  Proteins, 72, 393-401.  
17554049 H.Bierne, and P.Cossart (2007).
Listeria monocytogenes surface proteins: from genome predictions to function.
  Microbiol Mol Biol Rev, 71, 377-397.  
17662939 H.H.Niemann, V.Jäger, P.J.Butler, J.van den Heuvel, S.Schmidt, D.Ferraris, E.Gherardi, and D.W.Heinz (2007).
Structure of the human receptor tyrosine kinase met in complex with the Listeria invasion protein InlB.
  Cell, 130, 235-246.
PDB codes: 2uzx 2uzy
17517123 N.Matsushima, T.Tanaka, P.Enkhbayar, T.Mikami, M.Taga, K.Yamada, and Y.Kuroki (2007).
Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors.
  BMC Genomics, 8, 124.  
17620355 S.Brinster, B.Posteraro, H.Bierne, A.Alberti, S.Makhzami, M.Sanguinetti, and P.Serror (2007).
Enterococcal leucine-rich repeat-containing protein involved in virulence and host inflammatory response.
  Infect Immun, 75, 4463-4471.  
17305366 S.C.Hrtska, M.M.Kemp, E.M.Muñoz, O.Azizad, M.Banerjee, C.Raposo, J.Kumaran, P.Ghosh, and R.J.Linhardt (2007).
Investigation of the mechanism of binding between internalin B and heparin using surface plasmon resonance.
  Biochemistry, 46, 2697-2706.  
17715295 T.Wollert, D.W.Heinz, and W.D.Schubert (2007).
Thermodynamically reengineering the listerial invasion complex InlA/E-cadherin.
  Proc Natl Acad Sci U S A, 104, 13960-13965.
PDB codes: 2omt 2omu 2omx 2omz
17057330 A.Ooi, S.Hussain, A.Seyedarabi, and R.W.Pickersgill (2006).
Structure of internalin C from Listeria monocytogenes.
  Acta Crystallogr D Biol Crystallogr, 62, 1287-1293.
PDB code: 1xeu
16390439 G.Domínguez-Bernal, S.Müller-Altrock, B.González-Zorn, M.Scortti, P.Herrmann, H.J.Monzó, L.Lacharme, J.Kreft, and J.A.Vázquez-Boland (2006).
A spontaneous genomic deletion in Listeria ivanovii identifies LIPI-2, a species-specific pathogenicity island encoding sphingomyelinase and numerous internalins.
  Mol Microbiol, 59, 415-432.  
16763838 M.Popowska, and Z.Markiewicz (2006).
Characterization of Listeria monocytogenes protein Lmo0327 with murein hydrolase activity.
  Arch Microbiol, 186, 69-86.  
16098211 C.E.Stebbins (2005).
Structural microbiology at the pathogen-host interface.
  Cell Microbiol, 7, 1227-1236.  
16177371 C.Sabet, M.Lecuit, D.Cabanes, P.Cossart, and H.Bierne (2005).
LPXTG protein InlJ, a newly identified internalin involved in Listeria monocytogenes virulence.
  Infect Immun, 73, 6912-6922.  
16015374 D.Cabanes, S.Sousa, A.Cebriá, M.Lecuit, F.García-del Portillo, and P.Cossart (2005).
Gp96 is a receptor for a novel Listeria monocytogenes virulence factor, Vip, a surface protein.
  EMBO J, 24, 2827-2838.  
15953034 V.Liévin-Le Moal, A.L.Servin, and M.H.Coconnier-Polter (2005).
The increase in mucin exocytosis and the upregulation of MUC genes encoding for membrane-bound mucins induced by the thiol-activated exotoxin listeriolysin O is a host cell defence response that inhibits the cell-entry of Listeria monocytogenes.
  Cell Microbiol, 7, 1035-1048.  
15111623 A.Gruber, M.Mancek, H.Wagner, C.J.Kirschning, and R.Jerala (2004).
Structural model of MD-2 and functional role of its basic amino acid clusters involved in cellular lipopolysaccharide recognition.
  J Biol Chem, 279, 28475-28482.
PDB code: 1t2z
15093830 H.Remaut, and G.Waksman (2004).
Structural biology of bacterial pathogenesis.
  Curr Opin Struct Biol, 14, 161-170.  
15049825 M.Banerjee, J.Copp, D.Vuga, M.Marino, T.Chapman, P.van der Geer, and P.Ghosh (2004).
GW domains of the Listeria monocytogenes invasion protein InlB are required for potentiation of Met activation.
  Mol Microbiol, 52, 257-271.  
15487949 O.Dussurget, J.Pizarro-Cerda, and P.Cossart (2004).
Molecular determinants of Listeria monocytogenes virulence.
  Annu Rev Microbiol, 58, 587-610.  
14747988 P.Enkhbayar, M.Kamiya, M.Osaki, T.Matsumoto, and N.Matsushima (2004).
Structural principles of leucine-rich repeat (LRR) proteins.
  Proteins, 54, 394-403.  
12488439 J.Copp, M.Marino, M.Banerjee, P.Ghosh, and P.van der Geer (2003).
Multiple regions of internalin B contribute to its ability to turn on the Ras-mitogen-activated protein kinase pathway.
  J Biol Chem, 278, 7783-7789.  
14552836 J.K.Bell, G.E.Mullen, C.A.Leifer, A.Mazzoni, D.R.Davies, and D.M.Segal (2003).
Leucine-rich repeats and pathogen recognition in Toll-like receptors.
  Trends Immunol, 24, 528-533.  
14536023 M.Grynberg, L.Jaroszewski, and A.Godzik (2003).
Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.
  BMC Bioinformatics, 4, 46.  
12791136 M.P.Machner, S.Frese, W.D.Schubert, V.Orian-Rousseau, E.Gherardi, J.Wehland, H.H.Niemann, and D.W.Heinz (2003).
Aromatic amino acids at the surface of InlB are essential for host cell invasion by Listeria monocytogenes.
  Mol Microbiol, 48, 1525-1536.  
14638794 S.D.Reid, A.G.Montgomery, J.M.Voyich, F.R.DeLeo, B.Lei, R.M.Ireland, N.M.Green, M.Liu, S.Lukomski, and J.M.Musser (2003).
Characterization of an extracellular virulence factor made by group A Streptococcus with homology to the Listeria monocytogenes internalin family of proteins.
  Infect Immun, 71, 7043-7052.  
14661268 W.D.Schubert, and D.W.Heinz (2003).
Structural aspects of adhesion to and invasion of host cells by the human pathogen Listeria monocytogenes.
  Chembiochem, 4, 1285-1291.  
11973158 D.Cabanes, P.Dehoux, O.Dussurget, L.Frangeul, and P.Cossart (2002).
Surface proteins and the pathogenic potential of Listeria monocytogenes.
  Trends Microbiol, 10, 238-245.  
11929538 H.Bierne, S.K.Mazmanian, M.Trost, M.G.Pucciarelli, G.Liu, P.Dehoux, L.Jänsch, F.Garcia-del Portillo, O.Schneewind, and P.Cossart (2002).
Inactivation of the srtA gene in Listeria monocytogenes inhibits anchoring of surface proteins and affects virulence.
  Mol Microbiol, 43, 869-881.  
12226088 H.Ceulemans, V.Vulsteke, M.De Maeyer, K.Tatchell, W.Stalmans, and M.Bollen (2002).
Binding of the concave surface of the Sds22 superhelix to the alpha 4/alpha 5/alpha 6-triangle of protein phosphatase-1.
  J Biol Chem, 277, 47331-47337.  
12411480 M.Marino, M.Banerjee, R.Jonquières, P.Cossart, and P.Ghosh (2002).
GW domains of the Listeria monocytogenes invasion protein InlB are SH3-like and mediate binding to host ligands.
  EMBO J, 21, 5623-5634.
PDB code: 1m9s
12526809 W.D.Schubert, C.Urbanke, T.Ziehm, V.Beier, M.P.Machner, E.Domann, J.Wehland, T.Chakraborty, and D.W.Heinz (2002).
Structure of internalin, a major invasion protein of Listeria monocytogenes, in complex with its human receptor E-cadherin.
  Cell, 111, 825-836.
PDB codes: 1o6s 1o6t 1o6v
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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